Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
COL7A1Q02388 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL7A1Q02388 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL7A1Q02388 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL7A1Q02388 ATP5G2P1-201ENST00000433580 426 ntBASIC14.12□□□□□ -0.15
COL7A1Q02388 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC14.12□□□□□ -0.15
COL7A1Q02388 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
COL7A1Q02388 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC14.12□□□□□ -0.15
COL7A1Q02388 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
COL7A1Q02388 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL7A1Q02388 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC14.12□□□□□ -0.15
COL7A1Q02388 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL7A1Q02388 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
COL7A1Q02388 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
COL7A1Q02388 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL7A1Q02388 AL024507.2-201ENST00000606070 2574 ntBASIC14.12□□□□□ -0.15
COL7A1Q02388 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL7A1Q02388 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL7A1Q02388 AL023973.1-201ENST00000624619 620 ntBASIC14.12□□□□□ -0.15
COL7A1Q02388 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC14.12□□□□□ -0.15
COL7A1Q02388 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC14.12□□□□□ -0.15
COL7A1Q02388 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL7A1Q02388 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL7A1Q02388 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
COL7A1Q02388 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC14.12□□□□□ -0.15
COL7A1Q02388 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
COL7A1Q02388 LINC01465-201ENST00000408887 1940 ntBASIC14.12□□□□□ -0.15
COL7A1Q02388 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL7A1Q02388 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL7A1Q02388 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL7A1Q02388 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL7A1Q02388 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL7A1Q02388 SDHD-206ENST00000528182 754 ntTSL 3 BASIC14.11□□□□□ -0.15
COL7A1Q02388 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
COL7A1Q02388 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL7A1Q02388 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL7A1Q02388 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
COL7A1Q02388 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL7A1Q02388 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC14.11□□□□□ -0.15
COL7A1Q02388 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL7A1Q02388 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL7A1Q02388 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC14.11□□□□□ -0.15
COL7A1Q02388 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL7A1Q02388 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC14.11□□□□□ -0.15
COL7A1Q02388 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL7A1Q02388 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL7A1Q02388 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
COL7A1Q02388 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC14.11□□□□□ -0.15
COL7A1Q02388 RNA5SP419-201ENST00000515908 135 ntBASIC14.11□□□□□ -0.15
COL7A1Q02388 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC14.11□□□□□ -0.15
COL7A1Q02388 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC14.11□□□□□ -0.15
COL7A1Q02388 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC14.11□□□□□ -0.15
COL7A1Q02388 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
COL7A1Q02388 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC14.11□□□□□ -0.15
COL7A1Q02388 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC14.11□□□□□ -0.15
COL7A1Q02388 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC14.11□□□□□ -0.15
COL7A1Q02388 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
COL7A1Q02388 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC14.11□□□□□ -0.15
COL7A1Q02388 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL7A1Q02388 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC14.11□□□□□ -0.15
COL7A1Q02388 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL7A1Q02388 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC14.11□□□□□ -0.15
COL7A1Q02388 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL7A1Q02388 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL7A1Q02388 AP000593.1-201ENST00000393668 712 ntBASIC14.11□□□□□ -0.15
COL7A1Q02388 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
COL7A1Q02388 AC011298.2-201ENST00000617989 482 ntBASIC14.11□□□□□ -0.15
COL7A1Q02388 AL031008.1-201ENST00000619963 541 ntBASIC14.11□□□□□ -0.15
COL7A1Q02388 AC131212.4-201ENST00000623606 975 ntBASIC14.11□□□□□ -0.15
COL7A1Q02388 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC14.1□□□□□ -0.15
COL7A1Q02388 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
COL7A1Q02388 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL7A1Q02388 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
COL7A1Q02388 AP000523.1-201ENST00000398242 1049 ntBASIC14.1□□□□□ -0.15
COL7A1Q02388 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC14.1□□□□□ -0.15
COL7A1Q02388 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC14.1□□□□□ -0.15
COL7A1Q02388 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC14.1□□□□□ -0.15
COL7A1Q02388 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL7A1Q02388 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL7A1Q02388 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL7A1Q02388 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
COL7A1Q02388 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL7A1Q02388 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC14.1□□□□□ -0.15
COL7A1Q02388 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC14.1□□□□□ -0.15
COL7A1Q02388 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL7A1Q02388 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC14.1□□□□□ -0.15
COL7A1Q02388 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
COL7A1Q02388 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL7A1Q02388 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
COL7A1Q02388 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL7A1Q02388 GCSHP2-201ENST00000560971 527 ntBASIC14.1□□□□□ -0.15
COL7A1Q02388 NEK4P2-201ENST00000580004 1012 ntBASIC14.1□□□□□ -0.15
COL7A1Q02388 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
COL7A1Q02388 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
COL7A1Q02388 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL7A1Q02388 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
COL7A1Q02388 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC14.09□□□□□ -0.15
COL7A1Q02388 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL7A1Q02388 PPIH-202ENST00000372549 327 ntTSL 3 BASIC14.09□□□□□ -0.15
COL7A1Q02388 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms