Protein–RNA interactions for Protein: P62068

USP46, Ubiquitin carboxyl-terminal hydrolase 46, humanhuman

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP46P62068 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP46P62068 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
USP46P62068 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
USP46P62068 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC20.65■□□□□ 0.9
USP46P62068 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP46P62068 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC20.65■□□□□ 0.9
USP46P62068 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
USP46P62068 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP46P62068 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC20.65■□□□□ 0.9
USP46P62068 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
USP46P62068 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC20.65■□□□□ 0.9
USP46P62068 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
USP46P62068 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC20.65■□□□□ 0.9
USP46P62068 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC20.65■□□□□ 0.9
USP46P62068 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC20.65■□□□□ 0.9
USP46P62068 YBX1P10-201ENST00000444752 975 ntBASIC20.65■□□□□ 0.9
USP46P62068 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC20.65■□□□□ 0.9
USP46P62068 AP002982.1-201ENST00000492365 877 ntBASIC20.65■□□□□ 0.9
USP46P62068 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC20.65■□□□□ 0.9
USP46P62068 AL353708.3-201ENST00000610272 989 ntBASIC20.65■□□□□ 0.9
USP46P62068 AC026471.5-201ENST00000615068 467 ntBASIC20.65■□□□□ 0.9
USP46P62068 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
USP46P62068 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.65■□□□□ 0.9
USP46P62068 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP46P62068 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP46P62068 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
USP46P62068 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC20.64■□□□□ 0.9
USP46P62068 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
USP46P62068 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.9
USP46P62068 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
USP46P62068 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.64■□□□□ 0.89
USP46P62068 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP46P62068 SRI-203ENST00000419179 1307 ntTSL 2 BASIC20.64■□□□□ 0.89
USP46P62068 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
USP46P62068 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC20.64■□□□□ 0.89
USP46P62068 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
USP46P62068 KRT18P16-201ENST00000510337 1294 ntBASIC20.64■□□□□ 0.89
USP46P62068 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC20.64■□□□□ 0.89
USP46P62068 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
USP46P62068 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP46P62068 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC20.64■□□□□ 0.89
USP46P62068 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
USP46P62068 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP46P62068 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
USP46P62068 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP46P62068 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC20.63■□□□□ 0.89
USP46P62068 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP46P62068 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC20.63■□□□□ 0.89
USP46P62068 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP46P62068 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
USP46P62068 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC20.63■□□□□ 0.89
USP46P62068 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP46P62068 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP46P62068 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP46P62068 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP46P62068 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC20.63■□□□□ 0.89
USP46P62068 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC20.63■□□□□ 0.89
USP46P62068 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC20.63■□□□□ 0.89
USP46P62068 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
USP46P62068 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
USP46P62068 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC20.63■□□□□ 0.89
USP46P62068 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC20.63■□□□□ 0.89
USP46P62068 C1QL1P1-201ENST00000568105 661 ntBASIC20.63■□□□□ 0.89
USP46P62068 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP46P62068 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC20.63■□□□□ 0.89
USP46P62068 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC20.63■□□□□ 0.89
USP46P62068 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP46P62068 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP46P62068 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP46P62068 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP46P62068 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC20.63■□□□□ 0.89
USP46P62068 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
USP46P62068 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP46P62068 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP46P62068 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
USP46P62068 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
USP46P62068 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP46P62068 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC20.62■□□□□ 0.89
USP46P62068 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
USP46P62068 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC20.62■□□□□ 0.89
USP46P62068 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.62■□□□□ 0.89
USP46P62068 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP46P62068 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP46P62068 NIFKP9-201ENST00000419265 221 ntBASIC20.62■□□□□ 0.89
USP46P62068 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC20.62■□□□□ 0.89
USP46P62068 BX088651.1-201ENST00000540551 451 ntBASIC20.62■□□□□ 0.89
USP46P62068 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC20.62■□□□□ 0.89
USP46P62068 AP003071.4-201ENST00000562276 1284 ntBASIC20.62■□□□□ 0.89
USP46P62068 SNX21-213ENST00000614929 587 ntTSL 5 BASIC20.62■□□□□ 0.89
USP46P62068 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
USP46P62068 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP46P62068 AC099778.1-201ENST00000568593 1911 ntBASIC20.62■□□□□ 0.89
USP46P62068 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP46P62068 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
USP46P62068 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
USP46P62068 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
USP46P62068 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC20.62■□□□□ 0.89
USP46P62068 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
USP46P62068 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
USP46P62068 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms