Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LIM2P55344 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIM2P55344 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC18.64■□□□□ 0.57
LIM2P55344 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC18.64■□□□□ 0.57
LIM2P55344 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIM2P55344 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC18.64■□□□□ 0.57
LIM2P55344 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LIM2P55344 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
LIM2P55344 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIM2P55344 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LIM2P55344 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
LIM2P55344 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIM2P55344 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIM2P55344 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIM2P55344 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LIM2P55344 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIM2P55344 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LIM2P55344 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIM2P55344 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIM2P55344 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC18.63■□□□□ 0.57
LIM2P55344 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIM2P55344 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIM2P55344 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIM2P55344 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIM2P55344 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
LIM2P55344 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LIM2P55344 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC18.63■□□□□ 0.57
LIM2P55344 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LIM2P55344 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC18.63■□□□□ 0.57
LIM2P55344 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC18.63■□□□□ 0.57
LIM2P55344 MTDHP1-201ENST00000605323 784 ntBASIC18.63■□□□□ 0.57
LIM2P55344 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC18.63■□□□□ 0.57
LIM2P55344 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIM2P55344 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC18.63■□□□□ 0.57
LIM2P55344 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIM2P55344 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIM2P55344 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
LIM2P55344 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC18.63■□□□□ 0.57
LIM2P55344 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIM2P55344 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
LIM2P55344 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
LIM2P55344 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
LIM2P55344 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC18.62■□□□□ 0.57
LIM2P55344 AC116562.4-201ENST00000641316 2276 ntBASIC18.62■□□□□ 0.57
LIM2P55344 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIM2P55344 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIM2P55344 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC18.62■□□□□ 0.57
LIM2P55344 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIM2P55344 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIM2P55344 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
LIM2P55344 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC18.62■□□□□ 0.57
LIM2P55344 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC18.62■□□□□ 0.57
LIM2P55344 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC18.62■□□□□ 0.57
LIM2P55344 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC18.62■□□□□ 0.57
LIM2P55344 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC18.62■□□□□ 0.57
LIM2P55344 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIM2P55344 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
LIM2P55344 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIM2P55344 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LIM2P55344 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIM2P55344 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIM2P55344 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LIM2P55344 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIM2P55344 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LIM2P55344 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LIM2P55344 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
LIM2P55344 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIM2P55344 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
LIM2P55344 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
LIM2P55344 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC18.61■□□□□ 0.57
LIM2P55344 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC18.61■□□□□ 0.57
LIM2P55344 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIM2P55344 TREX2-204ENST00000370212 861 ntTSL 5 BASIC18.61■□□□□ 0.57
LIM2P55344 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
LIM2P55344 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIM2P55344 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
LIM2P55344 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC18.61■□□□□ 0.57
LIM2P55344 PRKY-204ENST00000533551 1019 ntBASIC18.61■□□□□ 0.57
LIM2P55344 ITM2C-210ENST00000620962 501 ntBASIC18.61■□□□□ 0.57
LIM2P55344 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC18.61■□□□□ 0.57
LIM2P55344 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIM2P55344 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LIM2P55344 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
LIM2P55344 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIM2P55344 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIM2P55344 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC18.6■□□□□ 0.57
LIM2P55344 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIM2P55344 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
LIM2P55344 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIM2P55344 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIM2P55344 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIM2P55344 ABHD17AP1-201ENST00000358206 933 ntBASIC18.6■□□□□ 0.57
LIM2P55344 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIM2P55344 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC18.6■□□□□ 0.57
LIM2P55344 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC18.6■□□□□ 0.57
LIM2P55344 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LIM2P55344 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIM2P55344 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIM2P55344 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC18.6■□□□□ 0.57
LIM2P55344 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms