Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
FOXA3P55318 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC14.72□□□□□ -0.05
FOXA3P55318 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
FOXA3P55318 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
FOXA3P55318 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC14.72□□□□□ -0.05
FOXA3P55318 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
FOXA3P55318 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
FOXA3P55318 OR6D1P-202ENST00000641007 5290 ntBASIC14.72□□□□□ -0.05
FOXA3P55318 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA3P55318 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA3P55318 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA3P55318 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA3P55318 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC14.71□□□□□ -0.05
FOXA3P55318 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA3P55318 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
FOXA3P55318 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC14.71□□□□□ -0.05
FOXA3P55318 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA3P55318 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA3P55318 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA3P55318 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA3P55318 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA3P55318 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
FOXA3P55318 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA3P55318 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA3P55318 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA3P55318 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
FOXA3P55318 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA3P55318 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA3P55318 SRR-208ENST00000576848 588 ntTSL 4 BASIC14.71□□□□□ -0.05
FOXA3P55318 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC14.71□□□□□ -0.05
FOXA3P55318 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
FOXA3P55318 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC14.71□□□□□ -0.05
FOXA3P55318 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC14.71□□□□□ -0.05
FOXA3P55318 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA3P55318 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
FOXA3P55318 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC14.71□□□□□ -0.05
FOXA3P55318 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC14.71□□□□□ -0.05
FOXA3P55318 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
FOXA3P55318 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
FOXA3P55318 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.06
FOXA3P55318 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC14.71□□□□□ -0.06
FOXA3P55318 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA3P55318 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC14.7□□□□□ -0.06
FOXA3P55318 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC14.7□□□□□ -0.06
FOXA3P55318 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA3P55318 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC14.7□□□□□ -0.06
FOXA3P55318 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA3P55318 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC14.7□□□□□ -0.06
FOXA3P55318 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
FOXA3P55318 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA3P55318 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA3P55318 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA3P55318 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC14.7□□□□□ -0.06
FOXA3P55318 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
FOXA3P55318 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
FOXA3P55318 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA3P55318 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA3P55318 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA3P55318 PTMA-205ENST00000410064 814 ntTSL 2 BASIC14.7□□□□□ -0.06
FOXA3P55318 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC14.7□□□□□ -0.06
FOXA3P55318 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC14.7□□□□□ -0.06
FOXA3P55318 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
FOXA3P55318 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA3P55318 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA3P55318 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA3P55318 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA3P55318 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA3P55318 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA3P55318 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC14.7□□□□□ -0.06
FOXA3P55318 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA3P55318 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC14.7□□□□□ -0.06
FOXA3P55318 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC14.7□□□□□ -0.06
FOXA3P55318 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA3P55318 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
FOXA3P55318 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA3P55318 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC14.69□□□□□ -0.06
FOXA3P55318 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA3P55318 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
FOXA3P55318 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA3P55318 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA3P55318 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
FOXA3P55318 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA3P55318 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC14.69□□□□□ -0.06
FOXA3P55318 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC14.69□□□□□ -0.06
FOXA3P55318 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA3P55318 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC14.69□□□□□ -0.06
FOXA3P55318 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA3P55318 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA3P55318 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC14.69□□□□□ -0.06
FOXA3P55318 AC126544.1-201ENST00000580842 1059 ntBASIC14.69□□□□□ -0.06
FOXA3P55318 CPT2-209ENST00000636935 803 ntTSL 5 BASIC14.69□□□□□ -0.06
FOXA3P55318 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
FOXA3P55318 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC14.69□□□□□ -0.06
FOXA3P55318 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA3P55318 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA3P55318 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA3P55318 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
FOXA3P55318 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA3P55318 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA3P55318 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC14.69□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms