Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
NEK3P51956 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NEK3P51956 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC20.22■□□□□ 0.83
NEK3P51956 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NEK3P51956 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
NEK3P51956 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
NEK3P51956 C1QBPP2-201ENST00000528754 825 ntBASIC20.22■□□□□ 0.83
NEK3P51956 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
NEK3P51956 RN7SL471P-201ENST00000580476 299 ntBASIC20.22■□□□□ 0.83
NEK3P51956 AL359736.2-201ENST00000621992 437 ntBASIC20.22■□□□□ 0.83
NEK3P51956 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NEK3P51956 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
NEK3P51956 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NEK3P51956 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
NEK3P51956 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NEK3P51956 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
NEK3P51956 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
NEK3P51956 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC20.22■□□□□ 0.83
NEK3P51956 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC20.21■□□□□ 0.83
NEK3P51956 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
NEK3P51956 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
NEK3P51956 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NEK3P51956 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC20.21■□□□□ 0.83
NEK3P51956 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC20.21■□□□□ 0.83
NEK3P51956 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
NEK3P51956 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC20.21■□□□□ 0.83
NEK3P51956 BAALC-201ENST00000297574 801 ntTSL 3 BASIC20.21■□□□□ 0.83
NEK3P51956 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
NEK3P51956 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
NEK3P51956 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC20.21■□□□□ 0.83
NEK3P51956 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
NEK3P51956 AC093827.2-201ENST00000512654 315 ntBASIC20.21■□□□□ 0.83
NEK3P51956 RNF121-214ENST00000533380 870 ntTSL 3 BASIC20.21■□□□□ 0.83
NEK3P51956 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC20.21■□□□□ 0.83
NEK3P51956 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
NEK3P51956 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC20.21■□□□□ 0.83
NEK3P51956 AP006294.2-201ENST00000641667 209 ntBASIC20.21■□□□□ 0.83
NEK3P51956 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC20.21■□□□□ 0.83
NEK3P51956 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
NEK3P51956 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NEK3P51956 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NEK3P51956 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
NEK3P51956 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
NEK3P51956 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NEK3P51956 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC20.21■□□□□ 0.83
NEK3P51956 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
NEK3P51956 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
NEK3P51956 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NEK3P51956 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NEK3P51956 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC20.2■□□□□ 0.82
NEK3P51956 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NEK3P51956 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC20.2■□□□□ 0.82
NEK3P51956 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC20.2■□□□□ 0.82
NEK3P51956 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC20.2■□□□□ 0.82
NEK3P51956 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
NEK3P51956 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC20.2■□□□□ 0.82
NEK3P51956 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC20.2■□□□□ 0.82
NEK3P51956 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
NEK3P51956 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NEK3P51956 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC20.2■□□□□ 0.82
NEK3P51956 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC20.2■□□□□ 0.82
NEK3P51956 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
NEK3P51956 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
NEK3P51956 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
NEK3P51956 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
NEK3P51956 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
NEK3P51956 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC20.2■□□□□ 0.82
NEK3P51956 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC20.2■□□□□ 0.82
NEK3P51956 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
NEK3P51956 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC20.2■□□□□ 0.82
NEK3P51956 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NEK3P51956 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
NEK3P51956 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
NEK3P51956 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NEK3P51956 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
NEK3P51956 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
NEK3P51956 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
NEK3P51956 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
NEK3P51956 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
NEK3P51956 RPPH1-201ENST00000516869 333 ntBASIC20.19■□□□□ 0.82
NEK3P51956 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC20.19■□□□□ 0.82
NEK3P51956 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC20.19■□□□□ 0.82
NEK3P51956 FAM197Y4-202ENST00000622692 608 ntBASIC20.19■□□□□ 0.82
NEK3P51956 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC20.19■□□□□ 0.82
NEK3P51956 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC20.19■□□□□ 0.82
NEK3P51956 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC20.19■□□□□ 0.82
NEK3P51956 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NEK3P51956 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NEK3P51956 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC20.19■□□□□ 0.82
NEK3P51956 H19-201ENST00000411754 1788 ntTSL 5 BASIC20.18■□□□□ 0.82
NEK3P51956 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
NEK3P51956 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC20.18■□□□□ 0.82
NEK3P51956 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
NEK3P51956 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NEK3P51956 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
NEK3P51956 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
NEK3P51956 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NEK3P51956 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NEK3P51956 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
NEK3P51956 PEX7-202ENST00000367756 680 ntTSL 3 BASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms