Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
RNF40O75150 VMO1-204ENST00000441199 741 ntTSL 2 BASIC21.11■□□□□ 0.97
RNF40O75150 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC21.11■□□□□ 0.97
RNF40O75150 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC21.11■□□□□ 0.97
RNF40O75150 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC21.11■□□□□ 0.97
RNF40O75150 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC21.11■□□□□ 0.97
RNF40O75150 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC21.11■□□□□ 0.97
RNF40O75150 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC21.11■□□□□ 0.97
RNF40O75150 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RNF40O75150 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RNF40O75150 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC21.11■□□□□ 0.97
RNF40O75150 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
RNF40O75150 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC21.11■□□□□ 0.97
RNF40O75150 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
RNF40O75150 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
RNF40O75150 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
RNF40O75150 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RNF40O75150 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC21.11■□□□□ 0.97
RNF40O75150 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RNF40O75150 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC21.1■□□□□ 0.97
RNF40O75150 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
RNF40O75150 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RNF40O75150 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
RNF40O75150 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RNF40O75150 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
RNF40O75150 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RNF40O75150 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC21.1■□□□□ 0.97
RNF40O75150 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RNF40O75150 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
RNF40O75150 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RNF40O75150 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
RNF40O75150 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC21.1■□□□□ 0.97
RNF40O75150 UBE2SP1-201ENST00000450587 669 ntBASIC21.1■□□□□ 0.97
RNF40O75150 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC21.1■□□□□ 0.97
RNF40O75150 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC21.1■□□□□ 0.97
RNF40O75150 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
RNF40O75150 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RNF40O75150 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC21.1■□□□□ 0.97
RNF40O75150 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC21.1■□□□□ 0.97
RNF40O75150 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC21.09■□□□□ 0.97
RNF40O75150 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC21.09■□□□□ 0.97
RNF40O75150 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
RNF40O75150 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RNF40O75150 MME-217ENST00000616757 1315 ntTSL 5 BASIC21.09■□□□□ 0.97
RNF40O75150 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
RNF40O75150 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC21.09■□□□□ 0.97
RNF40O75150 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
RNF40O75150 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RNF40O75150 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
RNF40O75150 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
RNF40O75150 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC21.09■□□□□ 0.97
RNF40O75150 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC21.09■□□□□ 0.97
RNF40O75150 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
RNF40O75150 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC21.09■□□□□ 0.97
RNF40O75150 PNMA6B-201ENST00000538162 1200 ntBASIC21.09■□□□□ 0.97
RNF40O75150 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC21.09■□□□□ 0.97
RNF40O75150 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC21.09■□□□□ 0.97
RNF40O75150 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
RNF40O75150 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RNF40O75150 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RNF40O75150 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
RNF40O75150 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
RNF40O75150 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
RNF40O75150 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
RNF40O75150 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
RNF40O75150 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
RNF40O75150 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
RNF40O75150 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC21.08■□□□□ 0.97
RNF40O75150 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
RNF40O75150 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
RNF40O75150 KRT18P68-201ENST00000392293 1000 ntBASIC21.08■□□□□ 0.97
RNF40O75150 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
RNF40O75150 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
RNF40O75150 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
RNF40O75150 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
RNF40O75150 AC092368.3-202ENST00000574180 1591 ntBASIC21.08■□□□□ 0.97
RNF40O75150 AC005332.7-201ENST00000614046 2005 ntBASIC21.08■□□□□ 0.97
RNF40O75150 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
RNF40O75150 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC21.08■□□□□ 0.96
RNF40O75150 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
RNF40O75150 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
RNF40O75150 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC21.08■□□□□ 0.96
RNF40O75150 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
RNF40O75150 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
RNF40O75150 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC21.08■□□□□ 0.96
RNF40O75150 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
RNF40O75150 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
RNF40O75150 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
RNF40O75150 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
RNF40O75150 STX5-203ENST00000394690 1568 ntTSL 5 BASIC21.07■□□□□ 0.96
RNF40O75150 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
RNF40O75150 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
RNF40O75150 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC21.07■□□□□ 0.96
RNF40O75150 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
RNF40O75150 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC21.07■□□□□ 0.96
RNF40O75150 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
RNF40O75150 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
RNF40O75150 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC21.07■□□□□ 0.96
RNF40O75150 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC21.07■□□□□ 0.96
RNF40O75150 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC21.07■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms