Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
HMGB3O15347 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC15.8■□□□□ 0.12
HMGB3O15347 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC15.8■□□□□ 0.12
HMGB3O15347 CACNA1I-202ENST00000402142 10004 ntAPPRIS P4 TSL 1 (best) BASIC15.8■□□□□ 0.12
HMGB3O15347 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC15.8■□□□□ 0.12
HMGB3O15347 LETM1P2-201ENST00000597330 2178 ntBASIC15.8■□□□□ 0.12
HMGB3O15347 PTGES2-AS1-201ENST00000443493 2100 ntBASIC15.8■□□□□ 0.12
HMGB3O15347 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
HMGB3O15347 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HMGB3O15347 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC15.8■□□□□ 0.12
HMGB3O15347 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HMGB3O15347 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
HMGB3O15347 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HMGB3O15347 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
HMGB3O15347 AC005224.4-201ENST00000583262 1652 ntBASIC15.79■□□□□ 0.12
HMGB3O15347 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HMGB3O15347 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC15.79■□□□□ 0.12
HMGB3O15347 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HMGB3O15347 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HMGB3O15347 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HMGB3O15347 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
HMGB3O15347 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HMGB3O15347 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HMGB3O15347 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC15.79■□□□□ 0.12
HMGB3O15347 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC15.79■□□□□ 0.12
HMGB3O15347 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HMGB3O15347 SNX3-202ENST00000349379 890 ntTSL 2 BASIC15.79■□□□□ 0.12
HMGB3O15347 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC15.79■□□□□ 0.12
HMGB3O15347 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC15.79■□□□□ 0.12
HMGB3O15347 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC15.79■□□□□ 0.12
HMGB3O15347 TREX1-205ENST00000625293 1783 ntBASIC15.79■□□□□ 0.12
HMGB3O15347 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC15.79■□□□□ 0.12
HMGB3O15347 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
HMGB3O15347 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HMGB3O15347 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC15.79■□□□□ 0.12
HMGB3O15347 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC15.79■□□□□ 0.12
HMGB3O15347 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HMGB3O15347 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
HMGB3O15347 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC15.79■□□□□ 0.12
HMGB3O15347 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC15.78■□□□□ 0.12
HMGB3O15347 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC15.78■□□□□ 0.12
HMGB3O15347 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
HMGB3O15347 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HMGB3O15347 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
HMGB3O15347 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HMGB3O15347 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HMGB3O15347 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HMGB3O15347 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
HMGB3O15347 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
HMGB3O15347 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HMGB3O15347 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC15.78■□□□□ 0.12
HMGB3O15347 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
HMGB3O15347 AL512631.2-201ENST00000604634 923 ntBASIC15.78■□□□□ 0.12
HMGB3O15347 AC011298.3-201ENST00000615796 283 ntBASIC15.78■□□□□ 0.12
HMGB3O15347 DPP3P2-201ENST00000416030 1696 ntBASIC15.78■□□□□ 0.12
HMGB3O15347 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
HMGB3O15347 AC005332.8-201ENST00000622750 2735 ntBASIC15.78■□□□□ 0.12
HMGB3O15347 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HMGB3O15347 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
HMGB3O15347 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HMGB3O15347 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HMGB3O15347 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
HMGB3O15347 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
HMGB3O15347 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC15.77■□□□□ 0.12
HMGB3O15347 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC15.77■□□□□ 0.12
HMGB3O15347 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
HMGB3O15347 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.12
HMGB3O15347 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HMGB3O15347 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HMGB3O15347 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
HMGB3O15347 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC15.77■□□□□ 0.12
HMGB3O15347 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
HMGB3O15347 DUX4L19-201ENST00000557448 1267 ntBASIC15.77■□□□□ 0.12
HMGB3O15347 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC15.77■□□□□ 0.12
HMGB3O15347 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC15.77■□□□□ 0.12
HMGB3O15347 MIR2861-201ENST00000636310 90 ntBASIC15.77■□□□□ 0.12
HMGB3O15347 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
HMGB3O15347 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
HMGB3O15347 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
HMGB3O15347 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
HMGB3O15347 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
HMGB3O15347 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
HMGB3O15347 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HMGB3O15347 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HMGB3O15347 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
HMGB3O15347 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC15.76■□□□□ 0.11
HMGB3O15347 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HMGB3O15347 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
HMGB3O15347 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC15.76■□□□□ 0.11
HMGB3O15347 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC15.76■□□□□ 0.11
HMGB3O15347 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
HMGB3O15347 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC15.76■□□□□ 0.11
HMGB3O15347 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC15.76■□□□□ 0.11
HMGB3O15347 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC15.76■□□□□ 0.11
HMGB3O15347 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
HMGB3O15347 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC15.76■□□□□ 0.11
HMGB3O15347 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
HMGB3O15347 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HMGB3O15347 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
HMGB3O15347 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms