Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
FOXN3O00409 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
FOXN3O00409 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
FOXN3O00409 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
FOXN3O00409 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
FOXN3O00409 ID1-201ENST00000376105 1233 ntBASIC21.02■□□□□ 0.96
FOXN3O00409 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
FOXN3O00409 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC21.02■□□□□ 0.96
FOXN3O00409 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC21.02■□□□□ 0.96
FOXN3O00409 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC21.02■□□□□ 0.96
FOXN3O00409 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
FOXN3O00409 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC21.02■□□□□ 0.96
FOXN3O00409 SOX15-203ENST00000570788 1093 ntBASIC21.02■□□□□ 0.96
FOXN3O00409 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC21.02■□□□□ 0.96
FOXN3O00409 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
FOXN3O00409 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC21.02■□□□□ 0.96
FOXN3O00409 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC21.02■□□□□ 0.96
FOXN3O00409 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
FOXN3O00409 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC21.02■□□□□ 0.95
FOXN3O00409 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
FOXN3O00409 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
FOXN3O00409 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
FOXN3O00409 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.95
FOXN3O00409 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC21.01■□□□□ 0.95
FOXN3O00409 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
FOXN3O00409 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
FOXN3O00409 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC21.01■□□□□ 0.95
FOXN3O00409 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
FOXN3O00409 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
FOXN3O00409 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
FOXN3O00409 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
FOXN3O00409 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
FOXN3O00409 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
FOXN3O00409 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC21.01■□□□□ 0.95
FOXN3O00409 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
FOXN3O00409 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
FOXN3O00409 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC21.01■□□□□ 0.95
FOXN3O00409 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
FOXN3O00409 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC21.01■□□□□ 0.95
FOXN3O00409 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
FOXN3O00409 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
FOXN3O00409 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
FOXN3O00409 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
FOXN3O00409 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
FOXN3O00409 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
FOXN3O00409 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
FOXN3O00409 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
FOXN3O00409 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC21.01■□□□□ 0.95
FOXN3O00409 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
FOXN3O00409 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
FOXN3O00409 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
FOXN3O00409 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC21■□□□□ 0.95
FOXN3O00409 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC21■□□□□ 0.95
FOXN3O00409 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
FOXN3O00409 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
FOXN3O00409 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
FOXN3O00409 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC21■□□□□ 0.95
FOXN3O00409 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC21■□□□□ 0.95
FOXN3O00409 ABHD17AP6-201ENST00000458502 1044 ntBASIC21■□□□□ 0.95
FOXN3O00409 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
FOXN3O00409 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
FOXN3O00409 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC21■□□□□ 0.95
FOXN3O00409 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC21■□□□□ 0.95
FOXN3O00409 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC21■□□□□ 0.95
FOXN3O00409 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
FOXN3O00409 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
FOXN3O00409 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
FOXN3O00409 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
FOXN3O00409 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
FOXN3O00409 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
FOXN3O00409 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
FOXN3O00409 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
FOXN3O00409 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
FOXN3O00409 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
FOXN3O00409 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC20.99■□□□□ 0.95
FOXN3O00409 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC20.99■□□□□ 0.95
FOXN3O00409 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
FOXN3O00409 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC20.99■□□□□ 0.95
FOXN3O00409 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
FOXN3O00409 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
FOXN3O00409 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
FOXN3O00409 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC20.99■□□□□ 0.95
FOXN3O00409 AC008687.6-201ENST00000596318 630 ntBASIC20.99■□□□□ 0.95
FOXN3O00409 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC20.99■□□□□ 0.95
FOXN3O00409 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
FOXN3O00409 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
FOXN3O00409 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
FOXN3O00409 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
FOXN3O00409 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
FOXN3O00409 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
FOXN3O00409 AC087289.5-201ENST00000586076 3175 ntBASIC20.98■□□□□ 0.95
FOXN3O00409 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
FOXN3O00409 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
FOXN3O00409 AL032819.2-201ENST00000624543 2162 ntBASIC20.98■□□□□ 0.95
FOXN3O00409 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
FOXN3O00409 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC20.98■□□□□ 0.95
FOXN3O00409 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC20.98■□□□□ 0.95
FOXN3O00409 UNC93B4-201ENST00000505679 747 ntBASIC20.98■□□□□ 0.95
FOXN3O00409 EMC9-206ENST00000560403 872 ntTSL 2 BASIC20.98■□□□□ 0.95
FOXN3O00409 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 56.7 ms