Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
VPS13AQ96RL7 SAP18P1-201ENST00000512058 390 ntBASIC5.14□□□□□ -1.59
VPS13AQ96RL7 AP003028.1-203ENST00000525832 444 ntTSL 3 BASIC5.14□□□□□ -1.59
VPS13AQ96RL7 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC5.14□□□□□ -1.59
VPS13AQ96RL7 AL049779.3-201ENST00000557141 606 ntBASIC5.14□□□□□ -1.59
VPS13AQ96RL7 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC5.14□□□□□ -1.59
VPS13AQ96RL7 KIAA1671-206ENST00000637069 6510 ntAPPRIS ALT2 TSL 5 BASIC5.14□□□□□ -1.59
VPS13AQ96RL7 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC5.14□□□□□ -1.59
VPS13AQ96RL7 ARHGAP32-202ENST00000392657 6556 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
VPS13AQ96RL7 AC006511.3-201ENST00000624929 1783 ntBASIC5.14□□□□□ -1.59
VPS13AQ96RL7 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
VPS13AQ96RL7 CEP152-202ENST00000380950 5635 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
VPS13AQ96RL7 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC5.14□□□□□ -1.59
VPS13AQ96RL7 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
VPS13AQ96RL7 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC5.14□□□□□ -1.59
VPS13AQ96RL7 PZP-201ENST00000261336 4610 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
VPS13AQ96RL7 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC5.14□□□□□ -1.59
VPS13AQ96RL7 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
VPS13AQ96RL7 AK3P5-201ENST00000432033 519 ntBASIC5.14□□□□□ -1.59
VPS13AQ96RL7 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC5.14□□□□□ -1.59
VPS13AQ96RL7 TRBV5-2-201ENST00000489095 273 ntBASIC5.14□□□□□ -1.59
VPS13AQ96RL7 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC5.14□□□□□ -1.59
VPS13AQ96RL7 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC5.14□□□□□ -1.59
VPS13AQ96RL7 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC5.14□□□□□ -1.59
VPS13AQ96RL7 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC5.14□□□□□ -1.59
VPS13AQ96RL7 SLC35F5-213ENST00000638402 1554 ntTSL 5 BASIC5.14□□□□□ -1.59
VPS13AQ96RL7 GAPVD1-203ENST00000312123 4320 ntAPPRIS ALT1 TSL 1 (best) BASIC5.14□□□□□ -1.59
VPS13AQ96RL7 ZNF43-202ENST00000357491 5249 ntAPPRIS ALT2 TSL 2 BASIC5.14□□□□□ -1.59
VPS13AQ96RL7 PDZD2-202ENST00000438447 11704 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
VPS13AQ96RL7 ZNF229-203ENST00000613197 4835 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
VPS13AQ96RL7 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
VPS13AQ96RL7 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC5.14□□□□□ -1.59
VPS13AQ96RL7 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC5.14□□□□□ -1.59
VPS13AQ96RL7 ZNF626-203ENST00000601440 5963 ntTSL 4 BASIC5.14□□□□□ -1.59
VPS13AQ96RL7 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
VPS13AQ96RL7 LINC00939-201ENST00000502479 4972 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
VPS13AQ96RL7 SRCAP-201ENST00000262518 11754 ntAPPRIS P1 TSL 2 BASIC5.14□□□□□ -1.59
VPS13AQ96RL7 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
VPS13AQ96RL7 RN7SKP145-201ENST00000363291 303 ntBASIC5.14□□□□□ -1.59
VPS13AQ96RL7 RPL31-204ENST00000409038 817 ntTSL 2 BASIC5.14□□□□□ -1.59
VPS13AQ96RL7 AC006065.1-201ENST00000422539 802 ntBASIC5.14□□□□□ -1.59
VPS13AQ96RL7 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC5.14□□□□□ -1.59
VPS13AQ96RL7 NANOGP9-201ENST00000439890 892 ntBASIC5.14□□□□□ -1.59
VPS13AQ96RL7 AL358232.1-201ENST00000448030 501 ntBASIC5.14□□□□□ -1.59
VPS13AQ96RL7 DSTNP2-201ENST00000504533 515 ntBASIC5.14□□□□□ -1.59
VPS13AQ96RL7 AC006130.2-201ENST00000586202 326 ntBASIC5.14□□□□□ -1.59
VPS13AQ96RL7 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC5.14□□□□□ -1.59
VPS13AQ96RL7 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC5.14□□□□□ -1.59
VPS13AQ96RL7 VPS8-227ENST00000625842 4969 ntAPPRIS P4 TSL 5 BASIC5.14□□□□□ -1.59
VPS13AQ96RL7 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC5.14□□□□□ -1.59
VPS13AQ96RL7 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
VPS13AQ96RL7 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC5.13□□□□□ -1.59
VPS13AQ96RL7 AC099654.2-201ENST00000433031 1980 ntBASIC5.13□□□□□ -1.59
VPS13AQ96RL7 TEX14-201ENST00000240361 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
VPS13AQ96RL7 SNORD113.2-201ENST00000364166 89 ntBASIC5.13□□□□□ -1.59
VPS13AQ96RL7 AL445189.1-201ENST00000405722 338 ntBASIC5.13□□□□□ -1.59
VPS13AQ96RL7 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC5.13□□□□□ -1.59
VPS13AQ96RL7 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC5.13□□□□□ -1.59
VPS13AQ96RL7 Z95152.1-201ENST00000453556 656 ntBASIC5.13□□□□□ -1.59
VPS13AQ96RL7 AL356390.1-201ENST00000455684 397 ntBASIC5.13□□□□□ -1.59
VPS13AQ96RL7 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC5.13□□□□□ -1.59
VPS13AQ96RL7 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC5.13□□□□□ -1.59
VPS13AQ96RL7 AC005832.1-201ENST00000544380 572 ntTSL 4 BASIC5.13□□□□□ -1.59
VPS13AQ96RL7 AL121873.1-201ENST00000616013 524 ntBASIC5.13□□□□□ -1.59
VPS13AQ96RL7 PSD3-202ENST00000327040 11689 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
VPS13AQ96RL7 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
VPS13AQ96RL7 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
VPS13AQ96RL7 TMED2-203ENST00000509052 1975 ntTSL 2 BASIC5.13□□□□□ -1.59
VPS13AQ96RL7 DLG2-201ENST00000280241 7730 ntAPPRIS ALT2 TSL 5 BASIC5.13□□□□□ -1.59
VPS13AQ96RL7 AP003119.3-201ENST00000566747 4192 ntBASIC5.13□□□□□ -1.59
VPS13AQ96RL7 VCAN-202ENST00000342785 7154 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
VPS13AQ96RL7 BDNF-203ENST00000395978 3988 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
VPS13AQ96RL7 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC5.13□□□□□ -1.59
VPS13AQ96RL7 ZNF283-203ENST00000588797 2428 ntTSL 2 BASIC5.13□□□□□ -1.59
VPS13AQ96RL7 ATF7IP2-204ENST00000396560 3665 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
VPS13AQ96RL7 IL5-201ENST00000231454 816 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
VPS13AQ96RL7 TXNP5-201ENST00000441043 315 ntBASIC5.13□□□□□ -1.59
VPS13AQ96RL7 AP000402.1-201ENST00000446404 540 ntTSL 3 BASIC5.13□□□□□ -1.59
VPS13AQ96RL7 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC5.13□□□□□ -1.59
VPS13AQ96RL7 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC5.13□□□□□ -1.59
VPS13AQ96RL7 MRE11-209ENST00000540013 1212 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
VPS13AQ96RL7 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC5.13□□□□□ -1.59
VPS13AQ96RL7 AC008543.3-201ENST00000586983 491 ntTSL 5 BASIC5.13□□□□□ -1.59
VPS13AQ96RL7 AC006115.2-201ENST00000596823 202 ntBASIC5.13□□□□□ -1.59
VPS13AQ96RL7 SNORD91A-202ENST00000609620 191 ntBASIC5.13□□□□□ -1.59
VPS13AQ96RL7 SYTL2-220ENST00000529581 1910 ntTSL 2 BASIC5.13□□□□□ -1.59
VPS13AQ96RL7 CASC19-260ENST00000641828 2001 ntBASIC5.13□□□□□ -1.59
VPS13AQ96RL7 ZNF451-204ENST00000370708 9478 ntTSL 2 BASIC5.13□□□□□ -1.59
VPS13AQ96RL7 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
VPS13AQ96RL7 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
VPS13AQ96RL7 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
VPS13AQ96RL7 LRMDA-208ENST00000496424 3923 ntTSL 2 BASIC5.13□□□□□ -1.59
VPS13AQ96RL7 NFIB-218ENST00000636432 1953 ntTSL 5 BASIC5.13□□□□□ -1.59
VPS13AQ96RL7 HTR2A-202ENST00000542664 5429 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
VPS13AQ96RL7 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC5.12□□□□□ -1.59
VPS13AQ96RL7 RNA5SP28-201ENST00000363841 119 ntBASIC5.12□□□□□ -1.59
VPS13AQ96RL7 RPL7P57-201ENST00000423238 740 ntBASIC5.12□□□□□ -1.59
VPS13AQ96RL7 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC5.12□□□□□ -1.59
VPS13AQ96RL7 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC5.12□□□□□ -1.59
VPS13AQ96RL7 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC5.12□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 82 ms