RNA–Protein interactions for RNA: ENST00000395978.7

BDNF-203, Transcript of brain derived neurotrophic factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene BDNF, Length 3,988 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BDNF-203ENST00000395978 NISCHQ9Y2I1 1504 aa12.63□□□□□ -0.39
BDNF-203ENST00000395978 DCAF8L2P0C7V8 631 aa11.52□□□□□ -0.57
BDNF-203ENST00000395978 SHROOM4Q9ULL8 1493 aa11.27□□□□□ -0.61
BDNF-203ENST00000395978 SUPT5HO00267 1087 aaKnown RBP11.24□□□□□ -0.61
BDNF-203ENST00000395978 CCDC180Q9P1Z9 1646 aa10.96□□□□□ -0.66
BDNF-203ENST00000395978 ABCC9O60706 1549 aa10.64□□□□□ -0.71
BDNF-203ENST00000395978 ZCCHC6Q5VYS8 1495 aaKnown RBP10.55□□□□□ -0.72
BDNF-203ENST00000395978 CHIC1Q5VXU3 224 aa10.53□□□□□ -0.72
BDNF-203ENST00000395978 EHMT2Q96KQ7 1210 aa10.48□□□□□ -0.73
BDNF-203ENST00000395978 TRIM41Q8WV44 630 aa10.47□□□□□ -0.73
BDNF-203ENST00000395978 FAM9AQ8IZU1 332 aaPredicted RBP10.47□□□□□ -0.73
BDNF-203ENST00000395978 PCGF6Q9BYE7 350 aa10.46□□□□□ -0.74
BDNF-203ENST00000395978 DCAF1Q9Y4B6 1507 aa10.38□□□□□ -0.75
BDNF-203ENST00000395978 NACADO15069 1562 aa10.33□□□□□ -0.76
BDNF-203ENST00000395978 LOC105371045A0A1W2PR82 267 aa10.31□□□□□ -0.76
BDNF-203ENST00000395978 MYO15BQ96JP2 1530 aa10.29□□□□□ -0.76
BDNF-203ENST00000395978 RB1CC1Q8TDY2 1594 aa10.29□□□□□ -0.76
BDNF-203ENST00000395978 HRCP23327 699 aa10.2□□□□□ -0.78
BDNF-203ENST00000395978 TRIM26Q12899 539 aaPredicted RBP10.2□□□□□ -0.78
BDNF-203ENST00000395978 SCRIBQ14160 1630 aa10.16□□□□□ -0.78
BDNF-203ENST00000395978 ZEB1P37275 1124 aaPredicted RBP10.16□□□□□ -0.78
BDNF-203ENST00000395978 APLP2Q06481 763 aa10.16□□□□□ -0.78
BDNF-203ENST00000395978 UBTFP17480 764 aaKnown RBP10.14□□□□□ -0.79
BDNF-203ENST00000395978 TTBK1Q5TCY1 1321 aaPredicted RBP10.12□□□□□ -0.79
BDNF-203ENST00000395978 PABPN1Q86U42 306 aaKnown RBP eCLIP10.1□□□□□ -0.79
BDNF-203ENST00000395978 PPARGC1BQ86YN6 1023 aaKnown RBP10.06□□□□□ -0.8
BDNF-203ENST00000395978 CCER1Q8TC90 406 aaPredicted RBP10.05□□□□□ -0.8
BDNF-203ENST00000395978 RSF1Q96T23 1441 aaPredicted RBP10.04□□□□□ -0.8
BDNF-203ENST00000395978 RANGAP1P46060 587 aaPredicted RBP10.03□□□□□ -0.8
BDNF-203ENST00000395978 SLC24A1O60721 1099 aa9.92□□□□□ -0.82
BDNF-203ENST00000395978 CECR2Q9BXF3 1484 aa9.87□□□□□ -0.83
BDNF-203ENST00000395978 CSRNP3Q8WYN3 585 aa9.87□□□□□ -0.83
BDNF-203ENST00000395978 UNC13AQ9UPW8 1703 aa9.84□□□□□ -0.83
BDNF-203ENST00000395978 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.82□□□□□ -0.84
BDNF-203ENST00000395978 BICRAQ9NZM4 1560 aa9.81□□□□□ -0.84
BDNF-203ENST00000395978 ATP1B4Q9UN42 357 aaPredicted RBP9.81□□□□□ -0.84
BDNF-203ENST00000395978 BAZ1AQ9NRL2 1556 aaPredicted RBP9.79□□□□□ -0.84
BDNF-203ENST00000395978 HNRNPUL2Q1KMD3 747 aaKnown RBP9.79□□□□□ -0.84
BDNF-203ENST00000395978 CENPBP07199 599 aaPredicted RBP9.78□□□□□ -0.84
BDNF-203ENST00000395978 MROH2BQ7Z745 1585 aa9.77□□□□□ -0.84
BDNF-203ENST00000395978 SMARCA4P51532 1647 aa9.68□□□□□ -0.86
BDNF-203ENST00000395978 ITGAEP38570 1179 aa9.68□□□□□ -0.86
BDNF-203ENST00000395978 EEA1Q15075 1411 aa9.67□□□□□ -0.86
BDNF-203ENST00000395978 WRNQ14191 1432 aaPredicted RBP eCLIP9.64□□□□□ -0.87
BDNF-203ENST00000395978 DIEXFQ68CQ4 756 aaKnown RBP9.64□□□□□ -0.87
BDNF-203ENST00000395978 SMARCA2P51531 1590 aa9.63□□□□□ -0.87
BDNF-203ENST00000395978 EIF4G1Q04637 1599 aaKnown RBP9.63□□□□□ -0.87
BDNF-203ENST00000395978 CCDC88BA6NC98 1476 aa9.63□□□□□ -0.87
BDNF-203ENST00000395978 WIZO95785 1651 aa9.62□□□□□ -0.87
BDNF-203ENST00000395978 BAZ1BQ9UIG0 1483 aaKnown RBP9.62□□□□□ -0.87
BDNF-203ENST00000395978 PELP1Q8IZL8 1130 aaKnown RBP9.62□□□□□ -0.87
BDNF-203ENST00000395978 ATAD2BQ9ULI0 1458 aa9.61□□□□□ -0.87
BDNF-203ENST00000395978 YTHDC1Q96MU7 727 aaKnown RBP9.61□□□□□ -0.87
BDNF-203ENST00000395978 CEP162Q5TB80 1403 aa9.61□□□□□ -0.87
BDNF-203ENST00000395978 TNIKQ9UKE5 1360 aa9.61□□□□□ -0.87
BDNF-203ENST00000395978 GOLGA3Q08378 1498 aa9.58□□□□□ -0.88
BDNF-203ENST00000395978 TOP2AP11388 1531 aaKnown RBP9.57□□□□□ -0.88
BDNF-203ENST00000395978 SOGA1O94964 1423 aa9.57□□□□□ -0.88
BDNF-203ENST00000395978 CLIP1P30622 1438 aa9.57□□□□□ -0.88
BDNF-203ENST00000395978 NCAPD3P42695 1498 aa9.55□□□□□ -0.88
BDNF-203ENST00000395978 FAM50AQ14320 339 aaKnown RBP9.54□□□□□ -0.88
BDNF-203ENST00000395978 ZNF316A6NFI3 1004 aaPredicted RBP9.54□□□□□ -0.88
BDNF-203ENST00000395978 ABCC8Q09428 1581 aa9.53□□□□□ -0.88
BDNF-203ENST00000395978 CEP164Q9UPV0 1460 aa9.53□□□□□ -0.88
BDNF-203ENST00000395978 CC2D2AQ9P2K1 1620 aa9.51□□□□□ -0.89
BDNF-203ENST00000395978 PEG3Q9GZU2 1588 aa9.51□□□□□ -0.89
BDNF-203ENST00000395978 P3H3Q8IVL6 736 aa9.5□□□□□ -0.89
BDNF-203ENST00000395978 HMGXB3Q12766 1538 aa9.47□□□□□ -0.89
BDNF-203ENST00000395978 KIF27Q86VH2 1401 aa9.46□□□□□ -0.9
BDNF-203ENST00000395978 NEUROD1Q13562 356 aa9.42□□□□□ -0.9
BDNF-203ENST00000395978 DNAJC5BQ9UF47 199 aa9.4□□□□□ -0.9
BDNF-203ENST00000395978 ACIN1Q9UKV3 1341 aaKnown RBP9.4□□□□□ -0.9
BDNF-203ENST00000395978 RUSC2Q8N2Y8 1516 aa9.39□□□□□ -0.91
BDNF-203ENST00000395978 VPS8Q8N3P4 1428 aa9.38□□□□□ -0.91
BDNF-203ENST00000395978 NEFLP07196 543 aa9.38□□□□□ -0.91
BDNF-203ENST00000395978 GTF3C3Q9Y5Q9 886 aa9.38□□□□□ -0.91
BDNF-203ENST00000395978 CADPSQ9ULU8 1353 aa9.37□□□□□ -0.91
BDNF-203ENST00000395978 TRIM52Q96A61 297 aa9.36□□□□□ -0.91
BDNF-203ENST00000395978 CUX2O14529 1486 aa9.33□□□□□ -0.92
BDNF-203ENST00000395978 CARMIL1Q5VZK9 1371 aa9.32□□□□□ -0.92
BDNF-203ENST00000395978 FBLN2P98095 1184 aa9.32□□□□□ -0.92
BDNF-203ENST00000395978 RAPGEF2Q9Y4G8 1499 aa9.31□□□□□ -0.92
BDNF-203ENST00000395978 ARID3CA6NKF2 412 aa9.31□□□□□ -0.92
BDNF-203ENST00000395978 CFTRP13569 1480 aa9.3□□□□□ -0.92
BDNF-203ENST00000395978 PDS5BQ9NTI5 1447 aa9.3□□□□□ -0.92
BDNF-203ENST00000395978 PRKCSHP14314 528 aaPredicted RBP9.29□□□□□ -0.92
BDNF-203ENST00000395978 CLSPNQ9HAW4 1339 aa9.29□□□□□ -0.92
BDNF-203ENST00000395978 MTUS2Q5JR59 1369 aa9.29□□□□□ -0.92
BDNF-203ENST00000395978 KANK4Q5T7N3 995 aaPredicted RBP9.28□□□□□ -0.92
BDNF-203ENST00000395978 CDK11AQ9UQ88 783 aaPredicted RBP9.28□□□□□ -0.92
BDNF-203ENST00000395978 MIER1Q8N108 512 aa9.27□□□□□ -0.92
BDNF-203ENST00000395978 CCNB3Q8WWL7 1395 aa9.26□□□□□ -0.93
BDNF-203ENST00000395978 ANP32CO43423 234 aa9.26□□□□□ -0.93
BDNF-203ENST00000395978 POLR3GLQ9BT43 218 aa9.26□□□□□ -0.93
BDNF-203ENST00000395978 SCAF1Q9H7N4 1312 aaKnown RBP9.25□□□□□ -0.93
BDNF-203ENST00000395978 FHAD1B1AJZ9 1412 aa9.25□□□□□ -0.93
BDNF-203ENST00000395978 FANCD2Q9BXW9 1451 aa9.24□□□□□ -0.93
BDNF-203ENST00000395978 TONSLQ96HA7 1378 aa9.24□□□□□ -0.93
BDNF-203ENST00000395978 ERCC6Q03468 1493 aa9.23□□□□□ -0.93
BDNF-203ENST00000395978 NESP48681 1621 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 97.5 ms