Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC6.42□□□□□ -1.38
USP39Q53GS9 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
USP39Q53GS9 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC6.42□□□□□ -1.38
USP39Q53GS9 PCBP1-AS1-286ENST00000625888 765 ntTSL 5 BASIC6.42□□□□□ -1.38
USP39Q53GS9 ZNF254-207ENST00000613065 4244 ntTSL 3 BASIC6.42□□□□□ -1.38
USP39Q53GS9 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC6.42□□□□□ -1.38
USP39Q53GS9 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
USP39Q53GS9 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
USP39Q53GS9 OFD1P15Y-201ENST00000411536 1392 ntBASIC6.42□□□□□ -1.38
USP39Q53GS9 ANKS1B-207ENST00000546960 1383 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
USP39Q53GS9 MTND4P34-201ENST00000572715 1371 ntBASIC6.42□□□□□ -1.38
USP39Q53GS9 NAPG-201ENST00000322897 3548 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
USP39Q53GS9 ERMARD-202ENST00000366772 2003 ntTSL 5 BASIC6.42□□□□□ -1.38
USP39Q53GS9 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC6.42□□□□□ -1.38
USP39Q53GS9 NLRC4-202ENST00000360906 3359 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
USP39Q53GS9 PLCZ1-201ENST00000266505 2148 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
USP39Q53GS9 Z93929.1-201ENST00000418200 1475 ntBASIC6.41□□□□□ -1.38
USP39Q53GS9 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC6.41□□□□□ -1.38
USP39Q53GS9 RALGAPA2-201ENST00000202677 6152 ntAPPRIS P1 TSL 5 BASIC6.41□□□□□ -1.38
USP39Q53GS9 EXD1-202ENST00000458580 2177 ntAPPRIS ALT2 TSL 2 BASIC6.41□□□□□ -1.38
USP39Q53GS9 MTCO1P11-201ENST00000429111 1528 ntBASIC6.41□□□□□ -1.38
USP39Q53GS9 PAPD4-203ENST00000428308 2204 ntAPPRIS P3 TSL 2 BASIC6.41□□□□□ -1.38
USP39Q53GS9 LINC01450-201ENST00000443406 3263 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
USP39Q53GS9 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC6.41□□□□□ -1.38
USP39Q53GS9 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC6.41□□□□□ -1.38
USP39Q53GS9 CASC19-238ENST00000641523 1558 ntBASIC6.41□□□□□ -1.38
USP39Q53GS9 MEIOC-202ENST00000409464 4067 ntAPPRIS ALT2 TSL 2 BASIC6.41□□□□□ -1.38
USP39Q53GS9 VEZF1-204ENST00000584396 2342 ntAPPRIS ALT2 TSL 5 BASIC6.41□□□□□ -1.38
USP39Q53GS9 POLR2B-202ENST00000381227 4108 ntAPPRIS P1 TSL 5 BASIC6.41□□□□□ -1.38
USP39Q53GS9 KIAA0232-201ENST00000307659 7841 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
USP39Q53GS9 RNU4-39P-201ENST00000362455 127 ntBASIC6.41□□□□□ -1.38
USP39Q53GS9 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
USP39Q53GS9 RN7SKP229-201ENST00000410465 302 ntBASIC6.41□□□□□ -1.38
USP39Q53GS9 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC6.41□□□□□ -1.38
USP39Q53GS9 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC6.41□□□□□ -1.38
USP39Q53GS9 AC018878.1-201ENST00000419904 433 ntTSL 3 BASIC6.41□□□□□ -1.38
USP39Q53GS9 AL137071.1-201ENST00000422150 243 ntTSL 3 BASIC6.41□□□□□ -1.38
USP39Q53GS9 NAP1L4P3-201ENST00000432820 1147 ntBASIC6.41□□□□□ -1.38
USP39Q53GS9 MRPS33P4-201ENST00000434892 317 ntBASIC6.41□□□□□ -1.38
USP39Q53GS9 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC6.41□□□□□ -1.38
USP39Q53GS9 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC6.41□□□□□ -1.38
USP39Q53GS9 PPIAP7-201ENST00000454070 489 ntBASIC6.41□□□□□ -1.38
USP39Q53GS9 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC6.41□□□□□ -1.38
USP39Q53GS9 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC6.41□□□□□ -1.38
USP39Q53GS9 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC6.41□□□□□ -1.38
USP39Q53GS9 RN7SL369P-201ENST00000477138 299 ntBASIC6.41□□□□□ -1.38
USP39Q53GS9 ATG10-AS1-201ENST00000504846 648 ntBASIC6.41□□□□□ -1.38
USP39Q53GS9 AC083906.1-201ENST00000509298 406 ntBASIC6.41□□□□□ -1.38
USP39Q53GS9 AC006499.4-201ENST00000510947 694 ntBASIC6.41□□□□□ -1.38
USP39Q53GS9 RNA5SP271-201ENST00000516700 88 ntBASIC6.41□□□□□ -1.38
USP39Q53GS9 LINC00967-201ENST00000517689 792 ntTSL 5 BASIC6.41□□□□□ -1.38
USP39Q53GS9 AP000620.1-201ENST00000527147 504 ntBASIC6.41□□□□□ -1.38
USP39Q53GS9 AP003396.4-201ENST00000527574 265 ntBASIC6.41□□□□□ -1.38
USP39Q53GS9 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC6.41□□□□□ -1.38
USP39Q53GS9 OR5AP2-201ENST00000544374 1006 ntAPPRIS P1 BASIC6.41□□□□□ -1.38
USP39Q53GS9 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC6.41□□□□□ -1.38
USP39Q53GS9 LINC00556-201ENST00000569603 412 ntBASIC6.41□□□□□ -1.38
USP39Q53GS9 AC090666.1-201ENST00000578241 445 ntBASIC6.41□□□□□ -1.38
USP39Q53GS9 AP005136.1-201ENST00000579765 429 ntBASIC6.41□□□□□ -1.38
USP39Q53GS9 BUB1P1-201ENST00000603541 607 ntBASIC6.41□□□□□ -1.38
USP39Q53GS9 AL355802.4-201ENST00000607635 548 ntBASIC6.41□□□□□ -1.38
USP39Q53GS9 AC112503.1-201ENST00000608436 391 ntBASIC6.41□□□□□ -1.38
USP39Q53GS9 AL161457.2-204ENST00000609241 869 ntTSL 5 BASIC6.41□□□□□ -1.38
USP39Q53GS9 AC109309.2-201ENST00000612597 332 ntBASIC6.41□□□□□ -1.38
USP39Q53GS9 AC004801.6-201ENST00000616571 978 ntBASIC6.41□□□□□ -1.38
USP39Q53GS9 AC008115.4-201ENST00000619780 775 ntBASIC6.41□□□□□ -1.38
USP39Q53GS9 AC099329.1-203ENST00000629885 767 ntTSL 5 BASIC6.41□□□□□ -1.38
USP39Q53GS9 AC129915.3-201ENST00000634128 948 ntBASIC6.41□□□□□ -1.38
USP39Q53GS9 KCNA2-209ENST00000639048 10836 ntTSL 5 BASIC6.41□□□□□ -1.38
USP39Q53GS9 CDC7-201ENST00000234626 3173 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
USP39Q53GS9 ZNF542P-202ENST00000467807 3209 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
USP39Q53GS9 TRIM34-204ENST00000514226 2493 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
USP39Q53GS9 PGBD4-201ENST00000397766 6612 ntAPPRIS P1 BASIC6.41□□□□□ -1.38
USP39Q53GS9 ERC2-214ENST00000612797 3831 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
USP39Q53GS9 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
USP39Q53GS9 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
USP39Q53GS9 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC6.41□□□□□ -1.38
USP39Q53GS9 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC6.41□□□□□ -1.38
USP39Q53GS9 PTK2-201ENST00000340930 4414 ntTSL 2 BASIC6.41□□□□□ -1.38
USP39Q53GS9 FASTKD2-203ENST00000403094 2344 ntAPPRIS P1 TSL 5 BASIC6.41□□□□□ -1.38
USP39Q53GS9 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC6.4□□□□□ -1.38
USP39Q53GS9 MPDZ-219ENST00000546205 6342 ntAPPRIS ALT2 TSL 5 BASIC6.4□□□□□ -1.38
USP39Q53GS9 ZNF484-202ENST00000375495 2867 ntAPPRIS P3 TSL 1 (best) BASIC6.4□□□□□ -1.38
USP39Q53GS9 TXNRD1-203ENST00000397736 3832 ntTSL 5 BASIC6.4□□□□□ -1.38
USP39Q53GS9 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC6.4□□□□□ -1.38
USP39Q53GS9 PPFIA2-219ENST00000550359 3808 ntTSL 2 BASIC6.4□□□□□ -1.38
USP39Q53GS9 MAGI2-222ENST00000636039 5671 ntTSL 5 BASIC6.4□□□□□ -1.38
USP39Q53GS9 CASC18-202ENST00000548557 2503 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
USP39Q53GS9 OR52N1-202ENST00000641645 2545 ntAPPRIS P1 BASIC6.4□□□□□ -1.38
USP39Q53GS9 HSPD1P14-201ENST00000432666 1618 ntBASIC6.4□□□□□ -1.38
USP39Q53GS9 SBNO1-202ENST00000420886 10981 ntAPPRIS ALT1 TSL 1 (best) BASIC6.4□□□□□ -1.38
USP39Q53GS9 MCFD2-206ENST00000409800 3955 ntTSL 4 BASIC6.4□□□□□ -1.38
USP39Q53GS9 AL359976.1-201ENST00000418655 3528 ntBASIC6.4□□□□□ -1.38
USP39Q53GS9 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC6.4□□□□□ -1.38
USP39Q53GS9 AL139384.2-201ENST00000613809 3590 ntBASIC6.4□□□□□ -1.38
USP39Q53GS9 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC6.4□□□□□ -1.38
USP39Q53GS9 AC022034.1-201ENST00000512867 2156 ntBASIC6.4□□□□□ -1.38
USP39Q53GS9 ZNF138-206ENST00000440598 2230 ntTSL 2 BASIC6.4□□□□□ -1.38
USP39Q53GS9 SLAMF6-203ENST00000368059 2743 ntAPPRIS P3 TSL 1 (best) BASIC6.4□□□□□ -1.38
USP39Q53GS9 SRSF3-202ENST00000373715 4222 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 201.3 ms