RNA–Protein interactions for RNA: ENST00000343200.9

VCAN-203, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 9,455 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-203ENST00000343200 PELP1Q8IZL8 1130 aaKnown RBP10.46□□□□□ -0.73
VCAN-203ENST00000343200 MYT1Q01538 1121 aa10.46□□□□□ -0.74
VCAN-203ENST00000343200 CCER1Q8TC90 406 aaPredicted RBP9.87□□□□□ -0.83
VCAN-203ENST00000343200 ERICH6Q7L0X2 663 aa9.86□□□□□ -0.83
VCAN-203ENST00000343200 TTBK1Q5TCY1 1321 aaPredicted RBP9.86□□□□□ -0.83
VCAN-203ENST00000343200 YTHDC1Q96MU7 727 aaKnown RBP9.74□□□□□ -0.85
VCAN-203ENST00000343200 CENPBP07199 599 aaPredicted RBP9.69□□□□□ -0.86
VCAN-203ENST00000343200 NEFLP07196 543 aa9.41□□□□□ -0.9
VCAN-203ENST00000343200 ZEB1P37275 1124 aaPredicted RBP9.39□□□□□ -0.91
VCAN-203ENST00000343200 DAXXQ9UER7 740 aaPredicted RBP9.32□□□□□ -0.92
VCAN-203ENST00000343200 RTL5Q5HYW3 569 aaPredicted RBP9.23□□□□□ -0.93
VCAN-203ENST00000343200 GLIPR1L2Q4G1C9 344 aa9.2□□□□□ -0.94
VCAN-203ENST00000343200 PCGF6Q9BYE7 350 aa9.18□□□□□ -0.94
VCAN-203ENST00000343200 APLP2Q06481 763 aa9.17□□□□□ -0.94
VCAN-203ENST00000343200 DCAF8L2P0C7V8 631 aa9.12□□□□□ -0.95
VCAN-203ENST00000343200 ZNF316A6NFI3 1004 aaPredicted RBP9.09□□□□□ -0.95
VCAN-203ENST00000343200 SUPT5HO00267 1087 aaKnown RBP9.08□□□□□ -0.96
VCAN-203ENST00000343200 MYT1LQ9UL68 1186 aa8.92□□□□□ -0.98
VCAN-203ENST00000343200 RANGAP1P46060 587 aaPredicted RBP8.91□□□□□ -0.98
VCAN-203ENST00000343200 EIF5BO60841 1220 aaKnown RBP8.9□□□□□ -0.98
VCAN-203ENST00000343200 CLSPNQ9HAW4 1339 aa8.87□□□□□ -0.99
VCAN-203ENST00000343200 EHMT2Q96KQ7 1210 aa8.87□□□□□ -0.99
VCAN-203ENST00000343200 FAM9AQ8IZU1 332 aaPredicted RBP8.86□□□□□ -0.99
VCAN-203ENST00000343200 HRCP23327 699 aa8.82□□□□□ -1
VCAN-203ENST00000343200 ANP32BQ92688 251 aaKnown RBP8.78□□□□□ -1
VCAN-203ENST00000343200 SHROOM4Q9ULL8 1493 aa8.76□□□□□ -1.01
VCAN-203ENST00000343200 CDK11AQ9UQ88 783 aaPredicted RBP8.73□□□□□ -1.01
VCAN-203ENST00000343200 ANP32AP39687 249 aaKnown RBP8.73□□□□□ -1.01
VCAN-203ENST00000343200 TNNT2P45379 298 aaPredicted RBP8.73□□□□□ -1.01
VCAN-203ENST00000343200 TRIM26Q12899 539 aaPredicted RBP8.72□□□□□ -1.01
VCAN-203ENST00000343200 DIEXFQ68CQ4 756 aaKnown RBP8.68□□□□□ -1.02
VCAN-203ENST00000343200 GTF3C3Q9Y5Q9 886 aa8.68□□□□□ -1.02
VCAN-203ENST00000343200 CDK11BP21127 795 aaKnown RBP8.61□□□□□ -1.03
VCAN-203ENST00000343200 NISCHQ9Y2I1 1504 aa8.59□□□□□ -1.03
VCAN-203ENST00000343200 NCLP19338 710 aaKnown RBP8.57□□□□□ -1.04
VCAN-203ENST00000343200 KAT6BQ8WYB5 2073 aa8.57□□□□□ -1.04
VCAN-203ENST00000343200 TRIM44Q96DX7 344 aaPredicted RBP8.56□□□□□ -1.04
VCAN-203ENST00000343200 ZBTB47Q9UFB7 747 aaPredicted RBP8.51□□□□□ -1.05
VCAN-203ENST00000343200 ACIN1Q9UKV3 1341 aaKnown RBP8.5□□□□□ -1.05
VCAN-203ENST00000343200 HSP90AA1P07900 732 aaKnown RBP8.49□□□□□ -1.05
VCAN-203ENST00000343200 BCANQ96GW7 911 aa8.49□□□□□ -1.05
VCAN-203ENST00000343200 TRIM41Q8WV44 630 aa8.49□□□□□ -1.05
VCAN-203ENST00000343200 NBR1Q14596 966 aa8.46□□□□□ -1.05
VCAN-203ENST00000343200 UBTFP17480 764 aaKnown RBP8.46□□□□□ -1.05
VCAN-203ENST00000343200 UPF2Q9HAU5 1272 aaKnown RBP8.46□□□□□ -1.06
VCAN-203ENST00000343200 ZNF326Q5BKZ1 582 aaKnown RBP8.43□□□□□ -1.06
VCAN-203ENST00000343200 POLR3GLQ9BT43 218 aa8.43□□□□□ -1.06
VCAN-203ENST00000343200 BCL11AQ9H165 835 aa8.43□□□□□ -1.06
VCAN-203ENST00000343200 ANP32EQ9BTT0 268 aa8.42□□□□□ -1.06
VCAN-203ENST00000343200 ERICH6BQ5W0A0 696 aa8.42□□□□□ -1.06
VCAN-203ENST00000343200 ATP1B4Q9UN42 357 aaPredicted RBP8.42□□□□□ -1.06
VCAN-203ENST00000343200 PPARGC1BQ86YN6 1023 aaKnown RBP8.41□□□□□ -1.06
VCAN-203ENST00000343200 ANP32CO43423 234 aa8.4□□□□□ -1.06
VCAN-203ENST00000343200 CANXP27824 592 aaKnown RBP8.4□□□□□ -1.07
VCAN-203ENST00000343200 NPM2Q86SE8 214 aaKnown RBP8.39□□□□□ -1.07
VCAN-203ENST00000343200 GON4LQ3T8J9 2241 aa8.37□□□□□ -1.07
VCAN-203ENST00000343200 CCDC180Q9P1Z9 1646 aa8.37□□□□□ -1.07
VCAN-203ENST00000343200 NAP1L5Q96NT1 182 aaPredicted RBP8.35□□□□□ -1.07
VCAN-203ENST00000343200 NEFMP07197 916 aa8.34□□□□□ -1.07
VCAN-203ENST00000343200 SLC24A1O60721 1099 aa8.32□□□□□ -1.08
VCAN-203ENST00000343200 MYO10Q9HD67 2058 aa8.31□□□□□ -1.08
VCAN-203ENST00000343200 ARXQ96QS3 562 aa8.31□□□□□ -1.08
VCAN-203ENST00000343200 PTMSP20962 102 aa8.3□□□□□ -1.08
VCAN-203ENST00000343200 DDRGK1Q96HY6 314 aa8.29□□□□□ -1.08
VCAN-203ENST00000343200 SLC4A1APQ9BWU0 796 aaKnown RBP8.28□□□□□ -1.08
VCAN-203ENST00000343200 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.28□□□□□ -1.08
VCAN-203ENST00000343200 BECN1Q14457 450 aa8.28□□□□□ -1.08
VCAN-203ENST00000343200 CHAF1AQ13111 956 aaPredicted RBP8.28□□□□□ -1.08
VCAN-203ENST00000343200 DNTTIP2Q5QJE6 756 aaKnown RBP8.27□□□□□ -1.09
VCAN-203ENST00000343200 CNGB1Q14028 1251 aaPredicted RBP8.27□□□□□ -1.09
VCAN-203ENST00000343200 CALRP27797 417 aaKnown RBP8.26□□□□□ -1.09
VCAN-203ENST00000343200 GOLGA6L22H0YM25 854 aa8.26□□□□□ -1.09
VCAN-203ENST00000343200 MYH10P35580 1976 aa8.25□□□□□ -1.09
VCAN-203ENST00000343200 FKBP8Q14318 412 aa8.24□□□□□ -1.09
VCAN-203ENST00000343200 AMER1Q5JTC6 1135 aaPredicted RBP8.23□□□□□ -1.09
VCAN-203ENST00000343200 SCAF1Q9H7N4 1312 aaKnown RBP8.23□□□□□ -1.09
VCAN-203ENST00000343200 PTMAP06454 111 aaKnown RBP8.23□□□□□ -1.09
VCAN-203ENST00000343200 TNNT3P45378 269 aaPredicted RBP8.22□□□□□ -1.09
VCAN-203ENST00000343200 ITGAEP38570 1179 aa8.21□□□□□ -1.09
VCAN-203ENST00000343200 HNRNPUL2Q1KMD3 747 aaKnown RBP8.2□□□□□ -1.1
VCAN-203ENST00000343200 RTN4Q9NQC3 1192 aaKnown RBP8.2□□□□□ -1.1
VCAN-203ENST00000343200 GOLGA6L6A8MZA4 724 aa8.2□□□□□ -1.1
VCAN-203ENST00000343200 CCDC136Q96JN2 1154 aa8.19□□□□□ -1.1
VCAN-203ENST00000343200 MSNP26038 577 aaKnown RBP8.17□□□□□ -1.1
VCAN-203ENST00000343200 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.17□□□□□ -1.1
VCAN-203ENST00000343200 PPM1GO15355 546 aaPredicted RBP8.16□□□□□ -1.1
VCAN-203ENST00000343200 ZRSR1Q15695 479 aaKnown RBP8.15□□□□□ -1.1
VCAN-203ENST00000343200 NRDCO43847 1150 aa8.15□□□□□ -1.11
VCAN-203ENST00000343200 L1TD1Q5T7N2 865 aaKnown RBP8.14□□□□□ -1.11
VCAN-203ENST00000343200 RSPH6AQ9H0K4 717 aa8.13□□□□□ -1.11
VCAN-203ENST00000343200 NOP58Q9Y2X3 529 aaKnown RBP8.13□□□□□ -1.11
VCAN-203ENST00000343200 SETQ01105 290 aaPredicted RBP8.12□□□□□ -1.11
VCAN-203ENST00000343200 HSP90AA2PQ14568 343 aaPredicted RBP8.11□□□□□ -1.11
VCAN-203ENST00000343200 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.11□□□□□ -1.11
VCAN-203ENST00000343200 DEKP35659 375 aaKnown RBP8.11□□□□□ -1.11
VCAN-203ENST00000343200 DCAF1Q9Y4B6 1507 aa8.1□□□□□ -1.11
VCAN-203ENST00000343200 NEUROD1Q13562 356 aa8.1□□□□□ -1.11
VCAN-203ENST00000343200 MYH16Q9H6N6 1097 aa8.08□□□□□ -1.12
VCAN-203ENST00000343200 CFAP65Q6ZU64 1925 aaKnown RBP8.08□□□□□ -1.12
VCAN-203ENST00000343200 A0A0U1RQG5 324 aaPredicted RBP8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms