Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
FOXA3P55318 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
FOXA3P55318 AC104623.2-202ENST00000623477 4002 ntBASIC4.21□□□□□ -1.74
FOXA3P55318 AC012254.3-201ENST00000591183 2117 ntBASIC4.21□□□□□ -1.74
FOXA3P55318 AL078621.3-201ENST00000623707 2042 ntBASIC4.21□□□□□ -1.74
FOXA3P55318 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.74
FOXA3P55318 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
FOXA3P55318 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
FOXA3P55318 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
FOXA3P55318 AC083843.2-201ENST00000568248 6253 ntBASIC4.2□□□□□ -1.74
FOXA3P55318 PCAT14-202ENST00000627127 3935 ntBASIC4.2□□□□□ -1.74
FOXA3P55318 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
FOXA3P55318 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
FOXA3P55318 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC4.2□□□□□ -1.74
FOXA3P55318 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC4.2□□□□□ -1.74
FOXA3P55318 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.2□□□□□ -1.74
FOXA3P55318 PSMA3-201ENST00000216455 970 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
FOXA3P55318 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
FOXA3P55318 ST3GAL3-212ENST00000372362 468 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
FOXA3P55318 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
FOXA3P55318 TRAV8-4-201ENST00000390438 469 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
FOXA3P55318 RN7SKP117-201ENST00000410175 264 ntBASIC4.2□□□□□ -1.74
FOXA3P55318 UBTFL2-201ENST00000411859 1191 ntBASIC4.2□□□□□ -1.74
FOXA3P55318 RPL35AP3-201ENST00000414680 288 ntBASIC4.2□□□□□ -1.74
FOXA3P55318 KIF4CP-201ENST00000422742 1279 ntBASIC4.2□□□□□ -1.74
FOXA3P55318 LINC01593-201ENST00000424355 388 ntTSL 5 BASIC4.2□□□□□ -1.74
FOXA3P55318 OR6R1P-201ENST00000431838 940 ntBASIC4.2□□□□□ -1.74
FOXA3P55318 AL133247.1-201ENST00000435713 646 ntTSL 3 BASIC4.2□□□□□ -1.74
FOXA3P55318 HMGN1P32-201ENST00000441744 256 ntBASIC4.2□□□□□ -1.74
FOXA3P55318 AC012512.1-201ENST00000446594 718 ntBASIC4.2□□□□□ -1.74
FOXA3P55318 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC4.2□□□□□ -1.74
FOXA3P55318 AL133319.1-201ENST00000447848 777 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
FOXA3P55318 AC090804.1-201ENST00000448870 490 ntBASIC4.2□□□□□ -1.74
FOXA3P55318 LINC01961-201ENST00000449954 745 ntTSL 5 BASIC4.2□□□□□ -1.74
FOXA3P55318 AZGP1P2-201ENST00000454506 345 ntBASIC4.2□□□□□ -1.74
FOXA3P55318 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC4.2□□□□□ -1.74
FOXA3P55318 AL157777.1-201ENST00000468100 304 ntBASIC4.2□□□□□ -1.74
FOXA3P55318 UBFD1P1-201ENST00000473259 814 ntBASIC4.2□□□□□ -1.74
FOXA3P55318 AC010451.1-201ENST00000509057 556 ntTSL 3 BASIC4.2□□□□□ -1.74
FOXA3P55318 AC008957.1-202ENST00000512329 681 ntTSL 3 BASIC4.2□□□□□ -1.74
FOXA3P55318 TPT1-AS1-207ENST00000520310 563 ntTSL 5 BASIC4.2□□□□□ -1.74
FOXA3P55318 AP001372.3-201ENST00000530510 609 ntTSL 2 BASIC4.2□□□□□ -1.74
FOXA3P55318 AC124891.1-201ENST00000536322 519 ntBASIC4.2□□□□□ -1.74
FOXA3P55318 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
FOXA3P55318 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC4.2□□□□□ -1.74
FOXA3P55318 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC4.2□□□□□ -1.74
FOXA3P55318 AL139354.1-201ENST00000554319 645 ntTSL 5 BASIC4.2□□□□□ -1.74
FOXA3P55318 AC037479.1-201ENST00000558361 625 ntBASIC4.2□□□□□ -1.74
FOXA3P55318 THSD4-AS1-201ENST00000561571 554 ntTSL 5 BASIC4.2□□□□□ -1.74
FOXA3P55318 ZNF174-204ENST00000572544 1002 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
FOXA3P55318 WBP1LP11-201ENST00000586141 328 ntBASIC4.2□□□□□ -1.74
FOXA3P55318 CT45A1-202ENST00000594565 1007 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
FOXA3P55318 SMIM12P1-201ENST00000603004 274 ntBASIC4.2□□□□□ -1.74
FOXA3P55318 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC4.2□□□□□ -1.74
FOXA3P55318 AC105402.3-203ENST00000608822 885 ntTSL 5 BASIC4.2□□□□□ -1.74
FOXA3P55318 MIR8082-201ENST00000612488 81 ntBASIC4.2□□□□□ -1.74
FOXA3P55318 AC244205.1-201ENST00000624935 705 ntTSL 2 BASIC4.2□□□□□ -1.74
FOXA3P55318 AL161457.2-201ENST00000629181 630 ntTSL 5 BASIC4.2□□□□□ -1.74
FOXA3P55318 LINC00682-204ENST00000637677 931 ntTSL 5 BASIC4.2□□□□□ -1.74
FOXA3P55318 SAMMSON-227ENST00000642114 1199 ntBASIC4.2□□□□□ -1.74
FOXA3P55318 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
FOXA3P55318 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
FOXA3P55318 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC4.2□□□□□ -1.74
FOXA3P55318 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
FOXA3P55318 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC4.2□□□□□ -1.74
FOXA3P55318 OR4N5-202ENST00000641086 2187 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
FOXA3P55318 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
FOXA3P55318 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
FOXA3P55318 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC4.2□□□□□ -1.74
FOXA3P55318 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
FOXA3P55318 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC4.2□□□□□ -1.74
FOXA3P55318 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC4.2□□□□□ -1.74
FOXA3P55318 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC4.19□□□□□ -1.74
FOXA3P55318 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC4.19□□□□□ -1.74
FOXA3P55318 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
FOXA3P55318 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
FOXA3P55318 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
FOXA3P55318 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
FOXA3P55318 Z83820.1-201ENST00000456978 1499 ntBASIC4.19□□□□□ -1.74
FOXA3P55318 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
FOXA3P55318 HELLS-205ENST00000394036 3131 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
FOXA3P55318 OR5B12-201ENST00000302572 1054 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
FOXA3P55318 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC4.19□□□□□ -1.74
FOXA3P55318 SELENOWP1-201ENST00000322792 252 ntBASIC4.19□□□□□ -1.74
FOXA3P55318 RNA5SP110-201ENST00000362638 115 ntBASIC4.19□□□□□ -1.74
FOXA3P55318 RN7SKP77-201ENST00000363261 353 ntBASIC4.19□□□□□ -1.74
FOXA3P55318 LINC01620-202ENST00000372910 649 ntTSL 5 BASIC4.19□□□□□ -1.74
FOXA3P55318 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC4.19□□□□□ -1.74
FOXA3P55318 SNORD94-201ENST00000386037 137 ntBASIC4.19□□□□□ -1.74
FOXA3P55318 TFPI-204ENST00000409676 1119 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
FOXA3P55318 CTSL3P-202ENST00000412179 788 ntBASIC4.19□□□□□ -1.74
FOXA3P55318 AL731684.1-201ENST00000415530 439 ntTSL 5 BASIC4.19□□□□□ -1.74
FOXA3P55318 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC4.19□□□□□ -1.74
FOXA3P55318 AC017019.1-201ENST00000426129 261 ntBASIC4.19□□□□□ -1.74
FOXA3P55318 RNASE9-203ENST00000429244 1084 ntAPPRIS P3 TSL 1 (best) BASIC4.19□□□□□ -1.74
FOXA3P55318 DEFA9P-201ENST00000433042 285 ntBASIC4.19□□□□□ -1.74
FOXA3P55318 AL450384.1-201ENST00000433526 413 ntTSL 2 BASIC4.19□□□□□ -1.74
FOXA3P55318 SLC25A24P1-202ENST00000434803 1220 ntBASIC4.19□□□□□ -1.74
FOXA3P55318 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC4.19□□□□□ -1.74
FOXA3P55318 AC010086.1-201ENST00000437359 1052 ntBASIC4.19□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 87.2 ms