Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC21.08■□□□□ 0.96
SNX9Q9Y5X1 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SNX9Q9Y5X1 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.96
SNX9Q9Y5X1 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
SNX9Q9Y5X1 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
SNX9Q9Y5X1 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
SNX9Q9Y5X1 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC21.07■□□□□ 0.96
SNX9Q9Y5X1 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SNX9Q9Y5X1 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SNX9Q9Y5X1 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
SNX9Q9Y5X1 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
SNX9Q9Y5X1 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SNX9Q9Y5X1 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SNX9Q9Y5X1 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC21.07■□□□□ 0.96
SNX9Q9Y5X1 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
SNX9Q9Y5X1 YBX1P10-201ENST00000444752 975 ntBASIC21.07■□□□□ 0.96
SNX9Q9Y5X1 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC21.07■□□□□ 0.96
SNX9Q9Y5X1 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC21.07■□□□□ 0.96
SNX9Q9Y5X1 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC21.07■□□□□ 0.96
SNX9Q9Y5X1 RARRES2P10-201ENST00000564312 460 ntBASIC21.07■□□□□ 0.96
SNX9Q9Y5X1 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
SNX9Q9Y5X1 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SNX9Q9Y5X1 GOLGA6L3-201ENST00000507199 1679 ntBASIC21.07■□□□□ 0.96
SNX9Q9Y5X1 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
SNX9Q9Y5X1 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC21.07■□□□□ 0.96
SNX9Q9Y5X1 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
SNX9Q9Y5X1 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SNX9Q9Y5X1 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SNX9Q9Y5X1 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
SNX9Q9Y5X1 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC21.07■□□□□ 0.96
SNX9Q9Y5X1 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
SNX9Q9Y5X1 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
SNX9Q9Y5X1 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC21.06■□□□□ 0.96
SNX9Q9Y5X1 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC21.06■□□□□ 0.96
SNX9Q9Y5X1 HTR7P1-201ENST00000538670 1336 ntBASIC21.06■□□□□ 0.96
SNX9Q9Y5X1 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
SNX9Q9Y5X1 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
SNX9Q9Y5X1 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SNX9Q9Y5X1 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC21.06■□□□□ 0.96
SNX9Q9Y5X1 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SNX9Q9Y5X1 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC21.06■□□□□ 0.96
SNX9Q9Y5X1 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SNX9Q9Y5X1 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SNX9Q9Y5X1 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SNX9Q9Y5X1 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SNX9Q9Y5X1 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC21.06■□□□□ 0.96
SNX9Q9Y5X1 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
SNX9Q9Y5X1 MIR718-201ENST00000390190 70 ntBASIC21.06■□□□□ 0.96
SNX9Q9Y5X1 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC21.06■□□□□ 0.96
SNX9Q9Y5X1 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC21.06■□□□□ 0.96
SNX9Q9Y5X1 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
SNX9Q9Y5X1 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC21.06■□□□□ 0.96
SNX9Q9Y5X1 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SNX9Q9Y5X1 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC21.06■□□□□ 0.96
SNX9Q9Y5X1 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SNX9Q9Y5X1 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SNX9Q9Y5X1 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC21.06■□□□□ 0.96
SNX9Q9Y5X1 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SNX9Q9Y5X1 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SNX9Q9Y5X1 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC21.05■□□□□ 0.96
SNX9Q9Y5X1 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SNX9Q9Y5X1 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SNX9Q9Y5X1 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
SNX9Q9Y5X1 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SNX9Q9Y5X1 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SNX9Q9Y5X1 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
SNX9Q9Y5X1 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC21.05■□□□□ 0.96
SNX9Q9Y5X1 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SNX9Q9Y5X1 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SNX9Q9Y5X1 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC21.05■□□□□ 0.96
SNX9Q9Y5X1 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC21.05■□□□□ 0.96
SNX9Q9Y5X1 RPS2P55-201ENST00000397318 883 ntBASIC21.05■□□□□ 0.96
SNX9Q9Y5X1 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SNX9Q9Y5X1 AC107956.1-201ENST00000494359 873 ntBASIC21.05■□□□□ 0.96
SNX9Q9Y5X1 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC21.05■□□□□ 0.96
SNX9Q9Y5X1 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC21.05■□□□□ 0.96
SNX9Q9Y5X1 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC21.05■□□□□ 0.96
SNX9Q9Y5X1 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
SNX9Q9Y5X1 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SNX9Q9Y5X1 AC009237.14-201ENST00000609975 1594 ntBASIC21.05■□□□□ 0.96
SNX9Q9Y5X1 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
SNX9Q9Y5X1 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
SNX9Q9Y5X1 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
SNX9Q9Y5X1 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
SNX9Q9Y5X1 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SNX9Q9Y5X1 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
SNX9Q9Y5X1 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC21.04■□□□□ 0.96
SNX9Q9Y5X1 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SNX9Q9Y5X1 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
SNX9Q9Y5X1 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SNX9Q9Y5X1 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SNX9Q9Y5X1 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
SNX9Q9Y5X1 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
SNX9Q9Y5X1 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC21.04■□□□□ 0.96
SNX9Q9Y5X1 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SNX9Q9Y5X1 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC21.04■□□□□ 0.96
SNX9Q9Y5X1 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC21.04■□□□□ 0.96
SNX9Q9Y5X1 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC21.04■□□□□ 0.96
SNX9Q9Y5X1 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
SNX9Q9Y5X1 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms