Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC20.3■□□□□ 0.84
PCDH9Q9HC56 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC20.3■□□□□ 0.84
PCDH9Q9HC56 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC20.3■□□□□ 0.84
PCDH9Q9HC56 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
PCDH9Q9HC56 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC20.3■□□□□ 0.84
PCDH9Q9HC56 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC20.3■□□□□ 0.84
PCDH9Q9HC56 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
PCDH9Q9HC56 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC20.3■□□□□ 0.84
PCDH9Q9HC56 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PCDH9Q9HC56 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PCDH9Q9HC56 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
PCDH9Q9HC56 APTR-205ENST00000447009 902 ntTSL 2 BASIC20.3■□□□□ 0.84
PCDH9Q9HC56 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC20.3■□□□□ 0.84
PCDH9Q9HC56 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC20.3■□□□□ 0.84
PCDH9Q9HC56 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC20.3■□□□□ 0.84
PCDH9Q9HC56 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
PCDH9Q9HC56 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PCDH9Q9HC56 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PCDH9Q9HC56 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
PCDH9Q9HC56 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PCDH9Q9HC56 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PCDH9Q9HC56 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PCDH9Q9HC56 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC20.29■□□□□ 0.84
PCDH9Q9HC56 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
PCDH9Q9HC56 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
PCDH9Q9HC56 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
PCDH9Q9HC56 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
PCDH9Q9HC56 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PCDH9Q9HC56 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
PCDH9Q9HC56 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC20.29■□□□□ 0.84
PCDH9Q9HC56 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC20.29■□□□□ 0.84
PCDH9Q9HC56 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PCDH9Q9HC56 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PCDH9Q9HC56 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC20.29■□□□□ 0.84
PCDH9Q9HC56 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC20.29■□□□□ 0.84
PCDH9Q9HC56 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
PCDH9Q9HC56 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC20.29■□□□□ 0.84
PCDH9Q9HC56 CRK-204ENST00000574295 1391 ntTSL 5 BASIC20.29■□□□□ 0.84
PCDH9Q9HC56 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
PCDH9Q9HC56 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PCDH9Q9HC56 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
PCDH9Q9HC56 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC20.29■□□□□ 0.84
PCDH9Q9HC56 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC20.29■□□□□ 0.84
PCDH9Q9HC56 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
PCDH9Q9HC56 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
PCDH9Q9HC56 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
PCDH9Q9HC56 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
PCDH9Q9HC56 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PCDH9Q9HC56 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PCDH9Q9HC56 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PCDH9Q9HC56 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PCDH9Q9HC56 GATS-209ENST00000454084 1030 ntTSL 3 BASIC20.28■□□□□ 0.84
PCDH9Q9HC56 SERP1-205ENST00000487153 657 ntTSL 4 BASIC20.28■□□□□ 0.84
PCDH9Q9HC56 KLF13-207ENST00000560473 489 ntTSL 3 BASIC20.28■□□□□ 0.84
PCDH9Q9HC56 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC20.28■□□□□ 0.84
PCDH9Q9HC56 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PCDH9Q9HC56 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PCDH9Q9HC56 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PCDH9Q9HC56 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
PCDH9Q9HC56 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PCDH9Q9HC56 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
PCDH9Q9HC56 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
PCDH9Q9HC56 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
PCDH9Q9HC56 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
PCDH9Q9HC56 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
PCDH9Q9HC56 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PCDH9Q9HC56 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PCDH9Q9HC56 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
PCDH9Q9HC56 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PCDH9Q9HC56 TNXA-203ENST00000507684 2038 ntBASIC20.27■□□□□ 0.84
PCDH9Q9HC56 AL020996.1-203ENST00000536896 2307 ntBASIC20.27■□□□□ 0.84
PCDH9Q9HC56 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PCDH9Q9HC56 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PCDH9Q9HC56 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PCDH9Q9HC56 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC20.27■□□□□ 0.84
PCDH9Q9HC56 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
PCDH9Q9HC56 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC20.27■□□□□ 0.84
PCDH9Q9HC56 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PCDH9Q9HC56 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC20.27■□□□□ 0.84
PCDH9Q9HC56 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PCDH9Q9HC56 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC20.27■□□□□ 0.84
PCDH9Q9HC56 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC20.27■□□□□ 0.84
PCDH9Q9HC56 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
PCDH9Q9HC56 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
PCDH9Q9HC56 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PCDH9Q9HC56 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PCDH9Q9HC56 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
PCDH9Q9HC56 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC20.27■□□□□ 0.83
PCDH9Q9HC56 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC20.27■□□□□ 0.83
PCDH9Q9HC56 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PCDH9Q9HC56 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PCDH9Q9HC56 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
PCDH9Q9HC56 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
PCDH9Q9HC56 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
PCDH9Q9HC56 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PCDH9Q9HC56 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PCDH9Q9HC56 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC20.26■□□□□ 0.83
PCDH9Q9HC56 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC20.26■□□□□ 0.83
PCDH9Q9HC56 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC20.26■□□□□ 0.83
PCDH9Q9HC56 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms