Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
RNF41Q9H4P4 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC23.24■■□□□ 1.31
RNF41Q9H4P4 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC23.24■■□□□ 1.31
RNF41Q9H4P4 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
RNF41Q9H4P4 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC23.24■■□□□ 1.31
RNF41Q9H4P4 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC23.23■■□□□ 1.31
RNF41Q9H4P4 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC23.23■■□□□ 1.31
RNF41Q9H4P4 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
RNF41Q9H4P4 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
RNF41Q9H4P4 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
RNF41Q9H4P4 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC23.23■■□□□ 1.31
RNF41Q9H4P4 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
RNF41Q9H4P4 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
RNF41Q9H4P4 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC23.23■■□□□ 1.31
RNF41Q9H4P4 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC23.23■■□□□ 1.31
RNF41Q9H4P4 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
RNF41Q9H4P4 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC23.23■■□□□ 1.31
RNF41Q9H4P4 BAALC-201ENST00000297574 801 ntTSL 3 BASIC23.23■■□□□ 1.31
RNF41Q9H4P4 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
RNF41Q9H4P4 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC23.23■■□□□ 1.31
RNF41Q9H4P4 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC23.23■■□□□ 1.31
RNF41Q9H4P4 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
RNF41Q9H4P4 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
RNF41Q9H4P4 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC23.23■■□□□ 1.31
RNF41Q9H4P4 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
RNF41Q9H4P4 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC23.23■■□□□ 1.31
RNF41Q9H4P4 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
RNF41Q9H4P4 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
RNF41Q9H4P4 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC23.22■■□□□ 1.31
RNF41Q9H4P4 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
RNF41Q9H4P4 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
RNF41Q9H4P4 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
RNF41Q9H4P4 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
RNF41Q9H4P4 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC23.22■■□□□ 1.31
RNF41Q9H4P4 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
RNF41Q9H4P4 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
RNF41Q9H4P4 TUBB8P6-201ENST00000436895 1288 ntBASIC23.22■■□□□ 1.31
RNF41Q9H4P4 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC23.22■■□□□ 1.31
RNF41Q9H4P4 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC23.22■■□□□ 1.31
RNF41Q9H4P4 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
RNF41Q9H4P4 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC23.22■■□□□ 1.31
RNF41Q9H4P4 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC23.22■■□□□ 1.31
RNF41Q9H4P4 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
RNF41Q9H4P4 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
RNF41Q9H4P4 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
RNF41Q9H4P4 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
RNF41Q9H4P4 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC23.21■■□□□ 1.31
RNF41Q9H4P4 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC23.21■■□□□ 1.31
RNF41Q9H4P4 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
RNF41Q9H4P4 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
RNF41Q9H4P4 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC23.21■■□□□ 1.31
RNF41Q9H4P4 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC23.21■■□□□ 1.31
RNF41Q9H4P4 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC23.21■■□□□ 1.31
RNF41Q9H4P4 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC23.21■■□□□ 1.31
RNF41Q9H4P4 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
RNF41Q9H4P4 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
RNF41Q9H4P4 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC23.21■■□□□ 1.31
RNF41Q9H4P4 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC23.21■■□□□ 1.31
RNF41Q9H4P4 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
RNF41Q9H4P4 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
RNF41Q9H4P4 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
RNF41Q9H4P4 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
RNF41Q9H4P4 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC23.2■■□□□ 1.31
RNF41Q9H4P4 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
RNF41Q9H4P4 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
RNF41Q9H4P4 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
RNF41Q9H4P4 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC23.2■■□□□ 1.3
RNF41Q9H4P4 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC23.2■■□□□ 1.3
RNF41Q9H4P4 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC23.2■■□□□ 1.3
RNF41Q9H4P4 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC23.2■■□□□ 1.3
RNF41Q9H4P4 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC23.2■■□□□ 1.3
RNF41Q9H4P4 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
RNF41Q9H4P4 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC23.2■■□□□ 1.3
RNF41Q9H4P4 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC23.2■■□□□ 1.3
RNF41Q9H4P4 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC23.2■■□□□ 1.3
RNF41Q9H4P4 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RNF41Q9H4P4 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
RNF41Q9H4P4 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC23.2■■□□□ 1.3
RNF41Q9H4P4 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RNF41Q9H4P4 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC23.2■■□□□ 1.3
RNF41Q9H4P4 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
RNF41Q9H4P4 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
RNF41Q9H4P4 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC23.19■■□□□ 1.3
RNF41Q9H4P4 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RNF41Q9H4P4 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC23.19■■□□□ 1.3
RNF41Q9H4P4 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC23.19■■□□□ 1.3
RNF41Q9H4P4 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC23.19■■□□□ 1.3
RNF41Q9H4P4 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC23.19■■□□□ 1.3
RNF41Q9H4P4 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC23.19■■□□□ 1.3
RNF41Q9H4P4 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RNF41Q9H4P4 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
RNF41Q9H4P4 RARRES2P10-201ENST00000564312 460 ntBASIC23.19■■□□□ 1.3
RNF41Q9H4P4 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC23.19■■□□□ 1.3
RNF41Q9H4P4 AP006294.2-201ENST00000641667 209 ntBASIC23.19■■□□□ 1.3
RNF41Q9H4P4 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
RNF41Q9H4P4 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RNF41Q9H4P4 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC23.19■■□□□ 1.3
RNF41Q9H4P4 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RNF41Q9H4P4 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC23.18■■□□□ 1.3
RNF41Q9H4P4 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC23.18■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms