Protein–RNA interactions for Protein: Q96P16

RPRD1A, Regulation of nuclear pre-mRNA domain-containing protein 1A, humanhuman

Predicted RBP Predictions only

Length 312 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPRD1AQ96P16 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RPRD1AQ96P16 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
RPRD1AQ96P16 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RPRD1AQ96P16 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
RPRD1AQ96P16 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
RPRD1AQ96P16 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC20.29■□□□□ 0.84
RPRD1AQ96P16 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC20.29■□□□□ 0.84
RPRD1AQ96P16 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC20.29■□□□□ 0.84
RPRD1AQ96P16 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC20.29■□□□□ 0.84
RPRD1AQ96P16 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC20.29■□□□□ 0.84
RPRD1AQ96P16 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC20.29■□□□□ 0.84
RPRD1AQ96P16 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RPRD1AQ96P16 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RPRD1AQ96P16 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
RPRD1AQ96P16 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RPRD1AQ96P16 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RPRD1AQ96P16 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RPRD1AQ96P16 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC20.29■□□□□ 0.84
RPRD1AQ96P16 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC20.29■□□□□ 0.84
RPRD1AQ96P16 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.28■□□□□ 0.84
RPRD1AQ96P16 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
RPRD1AQ96P16 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RPRD1AQ96P16 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RPRD1AQ96P16 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RPRD1AQ96P16 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
RPRD1AQ96P16 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RPRD1AQ96P16 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC20.28■□□□□ 0.84
RPRD1AQ96P16 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RPRD1AQ96P16 KRT16P5-201ENST00000455284 522 ntBASIC20.28■□□□□ 0.84
RPRD1AQ96P16 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC20.28■□□□□ 0.84
RPRD1AQ96P16 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC20.28■□□□□ 0.84
RPRD1AQ96P16 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RPRD1AQ96P16 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
RPRD1AQ96P16 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
RPRD1AQ96P16 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC20.28■□□□□ 0.84
RPRD1AQ96P16 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC20.28■□□□□ 0.84
RPRD1AQ96P16 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RPRD1AQ96P16 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC20.27■□□□□ 0.84
RPRD1AQ96P16 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC20.27■□□□□ 0.84
RPRD1AQ96P16 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RPRD1AQ96P16 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.84
RPRD1AQ96P16 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RPRD1AQ96P16 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
RPRD1AQ96P16 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
RPRD1AQ96P16 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC20.27■□□□□ 0.84
RPRD1AQ96P16 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RPRD1AQ96P16 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RPRD1AQ96P16 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RPRD1AQ96P16 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
RPRD1AQ96P16 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
RPRD1AQ96P16 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
RPRD1AQ96P16 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RPRD1AQ96P16 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
RPRD1AQ96P16 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC20.27■□□□□ 0.84
RPRD1AQ96P16 YBX1P10-201ENST00000444752 975 ntBASIC20.27■□□□□ 0.84
RPRD1AQ96P16 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RPRD1AQ96P16 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC20.27■□□□□ 0.84
RPRD1AQ96P16 AC093827.2-201ENST00000512654 315 ntBASIC20.27■□□□□ 0.84
RPRD1AQ96P16 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RPRD1AQ96P16 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
RPRD1AQ96P16 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RPRD1AQ96P16 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC20.27■□□□□ 0.84
RPRD1AQ96P16 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC20.27■□□□□ 0.83
RPRD1AQ96P16 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
RPRD1AQ96P16 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RPRD1AQ96P16 GOLGA6L3-201ENST00000507199 1679 ntBASIC20.26■□□□□ 0.83
RPRD1AQ96P16 AC009237.14-201ENST00000609975 1594 ntBASIC20.26■□□□□ 0.83
RPRD1AQ96P16 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RPRD1AQ96P16 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RPRD1AQ96P16 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RPRD1AQ96P16 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RPRD1AQ96P16 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC20.26■□□□□ 0.83
RPRD1AQ96P16 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC20.26■□□□□ 0.83
RPRD1AQ96P16 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC20.26■□□□□ 0.83
RPRD1AQ96P16 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC20.26■□□□□ 0.83
RPRD1AQ96P16 AC008550.1-201ENST00000511500 884 ntBASIC20.26■□□□□ 0.83
RPRD1AQ96P16 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RPRD1AQ96P16 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC20.26■□□□□ 0.83
RPRD1AQ96P16 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC20.26■□□□□ 0.83
RPRD1AQ96P16 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC20.26■□□□□ 0.83
RPRD1AQ96P16 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RPRD1AQ96P16 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RPRD1AQ96P16 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
RPRD1AQ96P16 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RPRD1AQ96P16 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RPRD1AQ96P16 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC20.26■□□□□ 0.83
RPRD1AQ96P16 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
RPRD1AQ96P16 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
RPRD1AQ96P16 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC20.25■□□□□ 0.83
RPRD1AQ96P16 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC20.25■□□□□ 0.83
RPRD1AQ96P16 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RPRD1AQ96P16 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RPRD1AQ96P16 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
RPRD1AQ96P16 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC20.25■□□□□ 0.83
RPRD1AQ96P16 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC20.25■□□□□ 0.83
RPRD1AQ96P16 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
RPRD1AQ96P16 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RPRD1AQ96P16 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC20.25■□□□□ 0.83
RPRD1AQ96P16 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
RPRD1AQ96P16 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms