Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC20.16■□□□□ 0.82
SKA1Q96BD8 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC20.16■□□□□ 0.82
SKA1Q96BD8 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC20.16■□□□□ 0.82
SKA1Q96BD8 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
SKA1Q96BD8 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC20.16■□□□□ 0.82
SKA1Q96BD8 AC005829.2-201ENST00000571422 1056 ntBASIC20.16■□□□□ 0.82
SKA1Q96BD8 AC120498.8-201ENST00000614275 531 ntBASIC20.16■□□□□ 0.82
SKA1Q96BD8 AL356652.1-201ENST00000615962 565 ntBASIC20.16■□□□□ 0.82
SKA1Q96BD8 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
SKA1Q96BD8 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC20.16■□□□□ 0.82
SKA1Q96BD8 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
SKA1Q96BD8 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SKA1Q96BD8 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC20.16■□□□□ 0.82
SKA1Q96BD8 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
SKA1Q96BD8 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.15■□□□□ 0.82
SKA1Q96BD8 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
SKA1Q96BD8 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SKA1Q96BD8 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SKA1Q96BD8 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SKA1Q96BD8 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SKA1Q96BD8 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
SKA1Q96BD8 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SKA1Q96BD8 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SKA1Q96BD8 AC233263.1-201ENST00000578059 224 ntBASIC20.15■□□□□ 0.82
SKA1Q96BD8 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC20.15■□□□□ 0.82
SKA1Q96BD8 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC20.15■□□□□ 0.82
SKA1Q96BD8 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC20.15■□□□□ 0.82
SKA1Q96BD8 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SKA1Q96BD8 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC20.15■□□□□ 0.82
SKA1Q96BD8 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
SKA1Q96BD8 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
SKA1Q96BD8 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC20.15■□□□□ 0.82
SKA1Q96BD8 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SKA1Q96BD8 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
SKA1Q96BD8 AC125437.2-201ENST00000625180 2167 ntBASIC20.15■□□□□ 0.82
SKA1Q96BD8 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
SKA1Q96BD8 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
SKA1Q96BD8 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
SKA1Q96BD8 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC20.14■□□□□ 0.81
SKA1Q96BD8 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SKA1Q96BD8 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC20.14■□□□□ 0.81
SKA1Q96BD8 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
SKA1Q96BD8 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SKA1Q96BD8 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.14■□□□□ 0.81
SKA1Q96BD8 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
SKA1Q96BD8 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SKA1Q96BD8 AL135905.2-201ENST00000584934 1404 ntBASIC20.14■□□□□ 0.81
SKA1Q96BD8 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SKA1Q96BD8 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC20.14■□□□□ 0.81
SKA1Q96BD8 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
SKA1Q96BD8 RER1-204ENST00000378518 522 ntTSL 3 BASIC20.14■□□□□ 0.81
SKA1Q96BD8 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SKA1Q96BD8 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC20.14■□□□□ 0.81
SKA1Q96BD8 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC20.14■□□□□ 0.81
SKA1Q96BD8 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC20.14■□□□□ 0.81
SKA1Q96BD8 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC20.14■□□□□ 0.81
SKA1Q96BD8 Z99916.2-201ENST00000604037 246 ntBASIC20.14■□□□□ 0.81
SKA1Q96BD8 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC20.14■□□□□ 0.81
SKA1Q96BD8 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
SKA1Q96BD8 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC20.14■□□□□ 0.81
SKA1Q96BD8 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SKA1Q96BD8 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC20.13■□□□□ 0.81
SKA1Q96BD8 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SKA1Q96BD8 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SKA1Q96BD8 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
SKA1Q96BD8 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
SKA1Q96BD8 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC20.13■□□□□ 0.81
SKA1Q96BD8 KRT17P2-201ENST00000300992 1314 ntBASIC20.13■□□□□ 0.81
SKA1Q96BD8 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SKA1Q96BD8 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SKA1Q96BD8 AC239809.2-201ENST00000415381 517 ntBASIC20.13■□□□□ 0.81
SKA1Q96BD8 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SKA1Q96BD8 AC012618.2-201ENST00000428058 849 ntBASIC20.13■□□□□ 0.81
SKA1Q96BD8 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC20.13■□□□□ 0.81
SKA1Q96BD8 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SKA1Q96BD8 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SKA1Q96BD8 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SKA1Q96BD8 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC20.13■□□□□ 0.81
SKA1Q96BD8 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC20.13■□□□□ 0.81
SKA1Q96BD8 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC20.13■□□□□ 0.81
SKA1Q96BD8 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SKA1Q96BD8 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SKA1Q96BD8 AC073912.3-201ENST00000624414 853 ntBASIC20.13■□□□□ 0.81
SKA1Q96BD8 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC20.13■□□□□ 0.81
SKA1Q96BD8 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SKA1Q96BD8 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SKA1Q96BD8 MCC-208ENST00000514701 2855 ntTSL 2 BASIC20.13■□□□□ 0.81
SKA1Q96BD8 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SKA1Q96BD8 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SKA1Q96BD8 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC20.12■□□□□ 0.81
SKA1Q96BD8 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
SKA1Q96BD8 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SKA1Q96BD8 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC20.12■□□□□ 0.81
SKA1Q96BD8 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
SKA1Q96BD8 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
SKA1Q96BD8 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
SKA1Q96BD8 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
SKA1Q96BD8 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC20.12■□□□□ 0.81
SKA1Q96BD8 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SKA1Q96BD8 SNORA78-201ENST00000459373 127 ntBASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms