Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC20.38■□□□□ 0.85
ATG4AQ8WYN0 MCC-208ENST00000514701 2855 ntTSL 2 BASIC20.38■□□□□ 0.85
ATG4AQ8WYN0 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC20.38■□□□□ 0.85
ATG4AQ8WYN0 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
ATG4AQ8WYN0 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
ATG4AQ8WYN0 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
ATG4AQ8WYN0 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
ATG4AQ8WYN0 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ATG4AQ8WYN0 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
ATG4AQ8WYN0 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
ATG4AQ8WYN0 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
ATG4AQ8WYN0 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
ATG4AQ8WYN0 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ATG4AQ8WYN0 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC20.37■□□□□ 0.85
ATG4AQ8WYN0 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ATG4AQ8WYN0 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ATG4AQ8WYN0 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
ATG4AQ8WYN0 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
ATG4AQ8WYN0 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ATG4AQ8WYN0 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ATG4AQ8WYN0 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ATG4AQ8WYN0 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ATG4AQ8WYN0 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
ATG4AQ8WYN0 AL512625.2-201ENST00000417533 625 ntBASIC20.37■□□□□ 0.85
ATG4AQ8WYN0 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
ATG4AQ8WYN0 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC20.37■□□□□ 0.85
ATG4AQ8WYN0 AC092437.1-201ENST00000624794 1048 ntBASIC20.37■□□□□ 0.85
ATG4AQ8WYN0 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ATG4AQ8WYN0 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ATG4AQ8WYN0 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
ATG4AQ8WYN0 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ATG4AQ8WYN0 AC120498.9-201ENST00000339021 3867 ntBASIC20.37■□□□□ 0.85
ATG4AQ8WYN0 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
ATG4AQ8WYN0 MOK-233ENST00000524214 1539 ntTSL 2 BASIC20.37■□□□□ 0.85
ATG4AQ8WYN0 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ATG4AQ8WYN0 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC20.37■□□□□ 0.85
ATG4AQ8WYN0 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
ATG4AQ8WYN0 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC20.37■□□□□ 0.85
ATG4AQ8WYN0 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
ATG4AQ8WYN0 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
ATG4AQ8WYN0 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
ATG4AQ8WYN0 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC20.36■□□□□ 0.85
ATG4AQ8WYN0 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
ATG4AQ8WYN0 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC20.36■□□□□ 0.85
ATG4AQ8WYN0 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
ATG4AQ8WYN0 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
ATG4AQ8WYN0 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC20.36■□□□□ 0.85
ATG4AQ8WYN0 SERP1-205ENST00000487153 657 ntTSL 4 BASIC20.36■□□□□ 0.85
ATG4AQ8WYN0 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
ATG4AQ8WYN0 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
ATG4AQ8WYN0 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
ATG4AQ8WYN0 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC20.36■□□□□ 0.85
ATG4AQ8WYN0 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
ATG4AQ8WYN0 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC20.36■□□□□ 0.85
ATG4AQ8WYN0 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
ATG4AQ8WYN0 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
ATG4AQ8WYN0 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
ATG4AQ8WYN0 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC20.36■□□□□ 0.85
ATG4AQ8WYN0 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
ATG4AQ8WYN0 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
ATG4AQ8WYN0 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
ATG4AQ8WYN0 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
ATG4AQ8WYN0 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC20.35■□□□□ 0.85
ATG4AQ8WYN0 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC20.35■□□□□ 0.85
ATG4AQ8WYN0 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
ATG4AQ8WYN0 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC20.35■□□□□ 0.85
ATG4AQ8WYN0 NXN-202ENST00000537628 1340 ntTSL 3 BASIC20.35■□□□□ 0.85
ATG4AQ8WYN0 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC20.35■□□□□ 0.85
ATG4AQ8WYN0 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC20.35■□□□□ 0.85
ATG4AQ8WYN0 IKBKGP1-201ENST00000612193 1073 ntBASIC20.35■□□□□ 0.85
ATG4AQ8WYN0 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
ATG4AQ8WYN0 AL050303.2-201ENST00000619798 666 ntBASIC20.35■□□□□ 0.85
ATG4AQ8WYN0 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC20.35■□□□□ 0.85
ATG4AQ8WYN0 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
ATG4AQ8WYN0 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
ATG4AQ8WYN0 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
ATG4AQ8WYN0 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
ATG4AQ8WYN0 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
ATG4AQ8WYN0 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
ATG4AQ8WYN0 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
ATG4AQ8WYN0 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC20.35■□□□□ 0.85
ATG4AQ8WYN0 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
ATG4AQ8WYN0 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
ATG4AQ8WYN0 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
ATG4AQ8WYN0 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
ATG4AQ8WYN0 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
ATG4AQ8WYN0 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
ATG4AQ8WYN0 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC20.34■□□□□ 0.85
ATG4AQ8WYN0 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC20.34■□□□□ 0.85
ATG4AQ8WYN0 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC20.34■□□□□ 0.85
ATG4AQ8WYN0 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
ATG4AQ8WYN0 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC20.34■□□□□ 0.85
ATG4AQ8WYN0 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
ATG4AQ8WYN0 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
ATG4AQ8WYN0 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
ATG4AQ8WYN0 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
ATG4AQ8WYN0 GPX1P1-201ENST00000388829 606 ntBASIC20.34■□□□□ 0.85
ATG4AQ8WYN0 METTL26-203ENST00000397664 604 ntTSL 2 BASIC20.34■□□□□ 0.85
ATG4AQ8WYN0 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
ATG4AQ8WYN0 LSM12P1-201ENST00000411836 588 ntBASIC20.34■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms