Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LMX1AQ8TE12 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LMX1AQ8TE12 MESTP1-201ENST00000404287 994 ntBASIC19.19■□□□□ 0.66
LMX1AQ8TE12 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LMX1AQ8TE12 AC004980.1-204ENST00000429707 299 ntBASIC19.19■□□□□ 0.66
LMX1AQ8TE12 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC19.19■□□□□ 0.66
LMX1AQ8TE12 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LMX1AQ8TE12 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC19.19■□□□□ 0.66
LMX1AQ8TE12 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC19.19■□□□□ 0.66
LMX1AQ8TE12 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC19.19■□□□□ 0.66
LMX1AQ8TE12 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC19.19■□□□□ 0.66
LMX1AQ8TE12 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
LMX1AQ8TE12 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC19.19■□□□□ 0.66
LMX1AQ8TE12 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
LMX1AQ8TE12 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
LMX1AQ8TE12 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
LMX1AQ8TE12 KRT18P22-201ENST00000402024 1347 ntBASIC19.19■□□□□ 0.66
LMX1AQ8TE12 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
LMX1AQ8TE12 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC19.19■□□□□ 0.66
LMX1AQ8TE12 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LMX1AQ8TE12 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LMX1AQ8TE12 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LMX1AQ8TE12 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC19.18■□□□□ 0.66
LMX1AQ8TE12 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC19.18■□□□□ 0.66
LMX1AQ8TE12 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LMX1AQ8TE12 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
LMX1AQ8TE12 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LMX1AQ8TE12 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
LMX1AQ8TE12 AC005521.1-201ENST00000393351 872 ntBASIC19.18■□□□□ 0.66
LMX1AQ8TE12 B3GAT3P1-201ENST00000471720 806 ntBASIC19.18■□□□□ 0.66
LMX1AQ8TE12 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC19.18■□□□□ 0.66
LMX1AQ8TE12 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC19.18■□□□□ 0.66
LMX1AQ8TE12 DUT-205ENST00000558813 769 ntTSL 2 BASIC19.18■□□□□ 0.66
LMX1AQ8TE12 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC19.18■□□□□ 0.66
LMX1AQ8TE12 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC19.18■□□□□ 0.66
LMX1AQ8TE12 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LMX1AQ8TE12 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LMX1AQ8TE12 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC19.18■□□□□ 0.66
LMX1AQ8TE12 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
LMX1AQ8TE12 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LMX1AQ8TE12 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
LMX1AQ8TE12 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LMX1AQ8TE12 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
LMX1AQ8TE12 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LMX1AQ8TE12 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
LMX1AQ8TE12 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LMX1AQ8TE12 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
LMX1AQ8TE12 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LMX1AQ8TE12 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC19.17■□□□□ 0.66
LMX1AQ8TE12 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
LMX1AQ8TE12 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LMX1AQ8TE12 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LMX1AQ8TE12 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
LMX1AQ8TE12 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC19.17■□□□□ 0.66
LMX1AQ8TE12 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
LMX1AQ8TE12 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC19.17■□□□□ 0.66
LMX1AQ8TE12 AC011506.1-201ENST00000474329 610 ntBASIC19.17■□□□□ 0.66
LMX1AQ8TE12 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
LMX1AQ8TE12 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC19.17■□□□□ 0.66
LMX1AQ8TE12 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC19.17■□□□□ 0.66
LMX1AQ8TE12 AC092865.7-201ENST00000641832 219 ntBASIC19.17■□□□□ 0.66
LMX1AQ8TE12 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LMX1AQ8TE12 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
LMX1AQ8TE12 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
LMX1AQ8TE12 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
LMX1AQ8TE12 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC19.17■□□□□ 0.66
LMX1AQ8TE12 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC19.17■□□□□ 0.66
LMX1AQ8TE12 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LMX1AQ8TE12 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
LMX1AQ8TE12 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
LMX1AQ8TE12 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LMX1AQ8TE12 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LMX1AQ8TE12 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LMX1AQ8TE12 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC19.16■□□□□ 0.66
LMX1AQ8TE12 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC19.16■□□□□ 0.66
LMX1AQ8TE12 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
LMX1AQ8TE12 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
LMX1AQ8TE12 BX119927.1-201ENST00000636596 1552 ntBASIC19.16■□□□□ 0.66
LMX1AQ8TE12 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
LMX1AQ8TE12 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LMX1AQ8TE12 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC19.16■□□□□ 0.66
LMX1AQ8TE12 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
LMX1AQ8TE12 CRAT-202ENST00000393384 973 ntTSL 2 BASIC19.16■□□□□ 0.66
LMX1AQ8TE12 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC19.16■□□□□ 0.66
LMX1AQ8TE12 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LMX1AQ8TE12 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC19.16■□□□□ 0.66
LMX1AQ8TE12 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LMX1AQ8TE12 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC19.16■□□□□ 0.66
LMX1AQ8TE12 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC19.16■□□□□ 0.66
LMX1AQ8TE12 P4HB-223ENST00000576390 439 ntTSL 4 BASIC19.16■□□□□ 0.66
LMX1AQ8TE12 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC19.16■□□□□ 0.66
LMX1AQ8TE12 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LMX1AQ8TE12 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
LMX1AQ8TE12 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LMX1AQ8TE12 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
LMX1AQ8TE12 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC19.16■□□□□ 0.66
LMX1AQ8TE12 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LMX1AQ8TE12 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LMX1AQ8TE12 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LMX1AQ8TE12 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms