Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 AC079834.2-201ENST00000609776 1949 ntBASIC6.06□□□□□ -1.44
SYNE1Q8NF91 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 ARMC10P1-201ENST00000313754 855 ntBASIC6.06□□□□□ -1.44
SYNE1Q8NF91 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 PENK-204ENST00000518770 863 ntTSL 2 BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 GUSBP5-202ENST00000510805 1989 ntBASIC6.05□□□□□ -1.44
SYNE1Q8NF91 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 TK2-213ENST00000563369 882 ntTSL 5 BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 STX6-204ENST00000542060 4809 ntTSL 2 BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 AC087499.1-201ENST00000418141 1075 ntBASIC6.05□□□□□ -1.44
SYNE1Q8NF91 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 AL135905.2-201ENST00000584934 1404 ntBASIC6.05□□□□□ -1.44
SYNE1Q8NF91 AL445675.2-201ENST00000620291 557 ntBASIC6.05□□□□□ -1.44
SYNE1Q8NF91 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 AC008040.2-201ENST00000461049 708 ntBASIC6.05□□□□□ -1.44
SYNE1Q8NF91 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 AC023632.3-201ENST00000521633 145 ntBASIC6.05□□□□□ -1.44
SYNE1Q8NF91 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 HYMAI-201ENST00000635591 3347 ntBASIC6.05□□□□□ -1.44
SYNE1Q8NF91 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 AC079598.2-202ENST00000546624 1451 ntBASIC6.05□□□□□ -1.44
SYNE1Q8NF91 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 RBM17P1-201ENST00000453646 1190 ntBASIC6.05□□□□□ -1.44
SYNE1Q8NF91 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 AC005363.2-201ENST00000618631 242 ntBASIC6.05□□□□□ -1.44
SYNE1Q8NF91 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 CABP2-204ENST00000636477 941 ntTSL 5 BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
SYNE1Q8NF91 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 AL353807.1-201ENST00000427475 662 ntBASIC6.04□□□□□ -1.44
SYNE1Q8NF91 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 HES2-205ENST00000487437 968 ntTSL 3 BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC6.04□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms