Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.2■□□□□ 0.82
SLC44A3Q8N4M1 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
SLC44A3Q8N4M1 PCED1CP-201ENST00000419887 785 ntBASIC20.2■□□□□ 0.82
SLC44A3Q8N4M1 PTPA-216ENST00000432651 857 ntTSL 2 BASIC20.2■□□□□ 0.82
SLC44A3Q8N4M1 KRT18P48-201ENST00000434763 852 ntBASIC20.2■□□□□ 0.82
SLC44A3Q8N4M1 TPM4P1-201ENST00000436100 807 ntBASIC20.2■□□□□ 0.82
SLC44A3Q8N4M1 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC20.2■□□□□ 0.82
SLC44A3Q8N4M1 FAM86EP-206ENST00000510506 987 ntBASIC20.2■□□□□ 0.82
SLC44A3Q8N4M1 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC20.2■□□□□ 0.82
SLC44A3Q8N4M1 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC20.2■□□□□ 0.82
SLC44A3Q8N4M1 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC20.2■□□□□ 0.82
SLC44A3Q8N4M1 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC20.2■□□□□ 0.82
SLC44A3Q8N4M1 AC141257.4-201ENST00000634557 245 ntBASIC20.2■□□□□ 0.82
SLC44A3Q8N4M1 AC136944.6-201ENST00000634818 245 ntBASIC20.2■□□□□ 0.82
SLC44A3Q8N4M1 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SLC44A3Q8N4M1 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
SLC44A3Q8N4M1 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
SLC44A3Q8N4M1 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SLC44A3Q8N4M1 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC20.2■□□□□ 0.82
SLC44A3Q8N4M1 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SLC44A3Q8N4M1 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC20.19■□□□□ 0.82
SLC44A3Q8N4M1 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC20.19■□□□□ 0.82
SLC44A3Q8N4M1 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SLC44A3Q8N4M1 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SLC44A3Q8N4M1 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SLC44A3Q8N4M1 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SLC44A3Q8N4M1 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
SLC44A3Q8N4M1 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SLC44A3Q8N4M1 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SLC44A3Q8N4M1 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
SLC44A3Q8N4M1 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC20.19■□□□□ 0.82
SLC44A3Q8N4M1 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SLC44A3Q8N4M1 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC20.19■□□□□ 0.82
SLC44A3Q8N4M1 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SLC44A3Q8N4M1 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SLC44A3Q8N4M1 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
SLC44A3Q8N4M1 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC20.19■□□□□ 0.82
SLC44A3Q8N4M1 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC20.19■□□□□ 0.82
SLC44A3Q8N4M1 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SLC44A3Q8N4M1 STK25-234ENST00000535007 2459 ntTSL 2 BASIC20.19■□□□□ 0.82
SLC44A3Q8N4M1 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC20.19■□□□□ 0.82
SLC44A3Q8N4M1 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
SLC44A3Q8N4M1 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC20.19■□□□□ 0.82
SLC44A3Q8N4M1 PLK5-205ENST00000642079 1969 ntBASIC20.19■□□□□ 0.82
SLC44A3Q8N4M1 DPP3P2-201ENST00000416030 1696 ntBASIC20.19■□□□□ 0.82
SLC44A3Q8N4M1 AC092338.2-201ENST00000568827 1415 ntBASIC20.19■□□□□ 0.82
SLC44A3Q8N4M1 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
SLC44A3Q8N4M1 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SLC44A3Q8N4M1 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC20.18■□□□□ 0.82
SLC44A3Q8N4M1 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SLC44A3Q8N4M1 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SLC44A3Q8N4M1 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SLC44A3Q8N4M1 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SLC44A3Q8N4M1 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC20.18■□□□□ 0.82
SLC44A3Q8N4M1 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SLC44A3Q8N4M1 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC20.18■□□□□ 0.82
SLC44A3Q8N4M1 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SLC44A3Q8N4M1 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
SLC44A3Q8N4M1 CD320-202ENST00000537716 1119 ntTSL 2 BASIC20.18■□□□□ 0.82
SLC44A3Q8N4M1 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC20.18■□□□□ 0.82
SLC44A3Q8N4M1 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC20.18■□□□□ 0.82
SLC44A3Q8N4M1 AL121956.5-201ENST00000625261 221 ntBASIC20.18■□□□□ 0.82
SLC44A3Q8N4M1 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.18■□□□□ 0.82
SLC44A3Q8N4M1 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SLC44A3Q8N4M1 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC20.18■□□□□ 0.82
SLC44A3Q8N4M1 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
SLC44A3Q8N4M1 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SLC44A3Q8N4M1 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC20.18■□□□□ 0.82
SLC44A3Q8N4M1 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SLC44A3Q8N4M1 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SLC44A3Q8N4M1 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SLC44A3Q8N4M1 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
SLC44A3Q8N4M1 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.17■□□□□ 0.82
SLC44A3Q8N4M1 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
SLC44A3Q8N4M1 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SLC44A3Q8N4M1 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SLC44A3Q8N4M1 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
SLC44A3Q8N4M1 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
SLC44A3Q8N4M1 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SLC44A3Q8N4M1 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC20.17■□□□□ 0.82
SLC44A3Q8N4M1 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC20.17■□□□□ 0.82
SLC44A3Q8N4M1 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
SLC44A3Q8N4M1 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC20.17■□□□□ 0.82
SLC44A3Q8N4M1 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC20.17■□□□□ 0.82
SLC44A3Q8N4M1 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC20.17■□□□□ 0.82
SLC44A3Q8N4M1 MYB-221ENST00000527615 2381 ntTSL 5 BASIC20.17■□□□□ 0.82
SLC44A3Q8N4M1 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SLC44A3Q8N4M1 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SLC44A3Q8N4M1 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
SLC44A3Q8N4M1 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC20.17■□□□□ 0.82
SLC44A3Q8N4M1 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
SLC44A3Q8N4M1 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC20.16■□□□□ 0.82
SLC44A3Q8N4M1 ERF-202ENST00000440177 2032 ntTSL 2 BASIC20.16■□□□□ 0.82
SLC44A3Q8N4M1 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SLC44A3Q8N4M1 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC20.16■□□□□ 0.82
SLC44A3Q8N4M1 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC20.16■□□□□ 0.82
SLC44A3Q8N4M1 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC20.16■□□□□ 0.82
SLC44A3Q8N4M1 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC20.16■□□□□ 0.82
SLC44A3Q8N4M1 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC20.16■□□□□ 0.82
SLC44A3Q8N4M1 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC20.16■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 74.7 ms