Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CSPG4Q6UVK1 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CSPG4Q6UVK1 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC16.26■□□□□ 0.19
CSPG4Q6UVK1 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC16.26■□□□□ 0.19
CSPG4Q6UVK1 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC16.26■□□□□ 0.19
CSPG4Q6UVK1 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CSPG4Q6UVK1 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CSPG4Q6UVK1 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC16.25■□□□□ 0.19
CSPG4Q6UVK1 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC16.25■□□□□ 0.19
CSPG4Q6UVK1 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC16.25■□□□□ 0.19
CSPG4Q6UVK1 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CSPG4Q6UVK1 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC16.25■□□□□ 0.19
CSPG4Q6UVK1 AP000692.2-201ENST00000608391 879 ntBASIC16.25■□□□□ 0.19
CSPG4Q6UVK1 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
CSPG4Q6UVK1 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC16.25■□□□□ 0.19
CSPG4Q6UVK1 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC16.25■□□□□ 0.19
CSPG4Q6UVK1 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CSPG4Q6UVK1 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
CSPG4Q6UVK1 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CSPG4Q6UVK1 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC16.25■□□□□ 0.19
CSPG4Q6UVK1 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CSPG4Q6UVK1 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC16.25■□□□□ 0.19
CSPG4Q6UVK1 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CSPG4Q6UVK1 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
CSPG4Q6UVK1 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CSPG4Q6UVK1 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CSPG4Q6UVK1 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC16.25■□□□□ 0.19
CSPG4Q6UVK1 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC16.25■□□□□ 0.19
CSPG4Q6UVK1 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC16.25■□□□□ 0.19
CSPG4Q6UVK1 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC16.25■□□□□ 0.19
CSPG4Q6UVK1 CLN6-214ENST00000636314 442 ntTSL 3 BASIC16.25■□□□□ 0.19
CSPG4Q6UVK1 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
CSPG4Q6UVK1 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
CSPG4Q6UVK1 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CSPG4Q6UVK1 AC244015.2-201ENST00000616358 1861 ntBASIC16.25■□□□□ 0.19
CSPG4Q6UVK1 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC16.25■□□□□ 0.19
CSPG4Q6UVK1 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CSPG4Q6UVK1 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CSPG4Q6UVK1 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CSPG4Q6UVK1 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
CSPG4Q6UVK1 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CSPG4Q6UVK1 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC16.24■□□□□ 0.19
CSPG4Q6UVK1 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC16.24■□□□□ 0.19
CSPG4Q6UVK1 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
CSPG4Q6UVK1 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC16.24■□□□□ 0.19
CSPG4Q6UVK1 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CSPG4Q6UVK1 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC16.24■□□□□ 0.19
CSPG4Q6UVK1 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC16.24■□□□□ 0.19
CSPG4Q6UVK1 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC16.24■□□□□ 0.19
CSPG4Q6UVK1 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
CSPG4Q6UVK1 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
CSPG4Q6UVK1 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CSPG4Q6UVK1 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CSPG4Q6UVK1 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC16.24■□□□□ 0.19
CSPG4Q6UVK1 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC16.24■□□□□ 0.19
CSPG4Q6UVK1 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CSPG4Q6UVK1 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC16.24■□□□□ 0.19
CSPG4Q6UVK1 PCED1CP-201ENST00000419887 785 ntBASIC16.24■□□□□ 0.19
CSPG4Q6UVK1 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CSPG4Q6UVK1 GXYLT1P6-201ENST00000456472 1187 ntBASIC16.24■□□□□ 0.19
CSPG4Q6UVK1 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CSPG4Q6UVK1 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CSPG4Q6UVK1 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CSPG4Q6UVK1 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
CSPG4Q6UVK1 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC16.24■□□□□ 0.19
CSPG4Q6UVK1 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC16.24■□□□□ 0.19
CSPG4Q6UVK1 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CSPG4Q6UVK1 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC16.23■□□□□ 0.19
CSPG4Q6UVK1 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC16.23■□□□□ 0.19
CSPG4Q6UVK1 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CSPG4Q6UVK1 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CSPG4Q6UVK1 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CSPG4Q6UVK1 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC16.23■□□□□ 0.19
CSPG4Q6UVK1 COX11P1-201ENST00000489116 835 ntBASIC16.23■□□□□ 0.19
CSPG4Q6UVK1 KRT18P16-201ENST00000510337 1294 ntBASIC16.23■□□□□ 0.19
CSPG4Q6UVK1 FAM86EP-206ENST00000510506 987 ntBASIC16.23■□□□□ 0.19
CSPG4Q6UVK1 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC16.23■□□□□ 0.19
CSPG4Q6UVK1 NDUFV2-AS1-203ENST00000608008 779 ntBASIC16.23■□□□□ 0.19
CSPG4Q6UVK1 AL023803.3-201ENST00000615559 522 ntBASIC16.23■□□□□ 0.19
CSPG4Q6UVK1 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CSPG4Q6UVK1 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CSPG4Q6UVK1 AC096733.2-201ENST00000609937 1394 ntBASIC16.23■□□□□ 0.19
CSPG4Q6UVK1 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CSPG4Q6UVK1 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CSPG4Q6UVK1 AP006587.1-201ENST00000534129 1502 ntBASIC16.23■□□□□ 0.19
CSPG4Q6UVK1 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CSPG4Q6UVK1 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CSPG4Q6UVK1 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CSPG4Q6UVK1 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CSPG4Q6UVK1 HIST1H2APS4-201ENST00000362070 348 ntBASIC16.23■□□□□ 0.19
CSPG4Q6UVK1 CD70-202ENST00000423145 881 ntTSL 2 BASIC16.23■□□□□ 0.19
CSPG4Q6UVK1 AC008040.2-201ENST00000461049 708 ntBASIC16.23■□□□□ 0.19
CSPG4Q6UVK1 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC16.23■□□□□ 0.19
CSPG4Q6UVK1 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC16.23■□□□□ 0.19
CSPG4Q6UVK1 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC16.23■□□□□ 0.19
CSPG4Q6UVK1 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC16.23■□□□□ 0.19
CSPG4Q6UVK1 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC16.23■□□□□ 0.19
CSPG4Q6UVK1 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CSPG4Q6UVK1 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
CSPG4Q6UVK1 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms