Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
ZNF549Q6P9A3 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
ZNF549Q6P9A3 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC19.53■□□□□ 0.72
ZNF549Q6P9A3 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
ZNF549Q6P9A3 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
ZNF549Q6P9A3 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC19.53■□□□□ 0.72
ZNF549Q6P9A3 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
ZNF549Q6P9A3 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC19.52■□□□□ 0.72
ZNF549Q6P9A3 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
ZNF549Q6P9A3 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
ZNF549Q6P9A3 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
ZNF549Q6P9A3 RER1-204ENST00000378518 522 ntTSL 3 BASIC19.52■□□□□ 0.72
ZNF549Q6P9A3 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
ZNF549Q6P9A3 AC069152.1-201ENST00000438030 544 ntBASIC19.52■□□□□ 0.72
ZNF549Q6P9A3 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
ZNF549Q6P9A3 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC19.52■□□□□ 0.72
ZNF549Q6P9A3 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
ZNF549Q6P9A3 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC19.52■□□□□ 0.72
ZNF549Q6P9A3 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
ZNF549Q6P9A3 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
ZNF549Q6P9A3 TFP1-202ENST00000475455 1573 ntBASIC19.52■□□□□ 0.71
ZNF549Q6P9A3 AC092368.3-202ENST00000574180 1591 ntBASIC19.52■□□□□ 0.71
ZNF549Q6P9A3 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
ZNF549Q6P9A3 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
ZNF549Q6P9A3 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
ZNF549Q6P9A3 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
ZNF549Q6P9A3 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC19.52■□□□□ 0.71
ZNF549Q6P9A3 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
ZNF549Q6P9A3 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
ZNF549Q6P9A3 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
ZNF549Q6P9A3 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
ZNF549Q6P9A3 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC19.51■□□□□ 0.71
ZNF549Q6P9A3 CALM3-202ENST00000391918 702 ntTSL 2 BASIC19.51■□□□□ 0.71
ZNF549Q6P9A3 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC19.51■□□□□ 0.71
ZNF549Q6P9A3 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC19.51■□□□□ 0.71
ZNF549Q6P9A3 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
ZNF549Q6P9A3 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC19.51■□□□□ 0.71
ZNF549Q6P9A3 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC19.51■□□□□ 0.71
ZNF549Q6P9A3 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
ZNF549Q6P9A3 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC19.51■□□□□ 0.71
ZNF549Q6P9A3 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
ZNF549Q6P9A3 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC19.51■□□□□ 0.71
ZNF549Q6P9A3 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC19.51■□□□□ 0.71
ZNF549Q6P9A3 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
ZNF549Q6P9A3 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC19.51■□□□□ 0.71
ZNF549Q6P9A3 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
ZNF549Q6P9A3 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
ZNF549Q6P9A3 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
ZNF549Q6P9A3 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
ZNF549Q6P9A3 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC19.51■□□□□ 0.71
ZNF549Q6P9A3 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
ZNF549Q6P9A3 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC19.51■□□□□ 0.71
ZNF549Q6P9A3 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
ZNF549Q6P9A3 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC19.5■□□□□ 0.71
ZNF549Q6P9A3 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC19.5■□□□□ 0.71
ZNF549Q6P9A3 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
ZNF549Q6P9A3 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
ZNF549Q6P9A3 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC19.5■□□□□ 0.71
ZNF549Q6P9A3 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
ZNF549Q6P9A3 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
ZNF549Q6P9A3 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
ZNF549Q6P9A3 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
ZNF549Q6P9A3 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
ZNF549Q6P9A3 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
ZNF549Q6P9A3 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
ZNF549Q6P9A3 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
ZNF549Q6P9A3 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC19.5■□□□□ 0.71
ZNF549Q6P9A3 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
ZNF549Q6P9A3 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC19.5■□□□□ 0.71
ZNF549Q6P9A3 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
ZNF549Q6P9A3 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
ZNF549Q6P9A3 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
ZNF549Q6P9A3 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
ZNF549Q6P9A3 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
ZNF549Q6P9A3 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
ZNF549Q6P9A3 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
ZNF549Q6P9A3 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC19.5■□□□□ 0.71
ZNF549Q6P9A3 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC19.5■□□□□ 0.71
ZNF549Q6P9A3 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
ZNF549Q6P9A3 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
ZNF549Q6P9A3 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
ZNF549Q6P9A3 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
ZNF549Q6P9A3 AC005332.7-201ENST00000614046 2005 ntBASIC19.49■□□□□ 0.71
ZNF549Q6P9A3 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
ZNF549Q6P9A3 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
ZNF549Q6P9A3 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC19.49■□□□□ 0.71
ZNF549Q6P9A3 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
ZNF549Q6P9A3 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC19.49■□□□□ 0.71
ZNF549Q6P9A3 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC19.49■□□□□ 0.71
ZNF549Q6P9A3 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
ZNF549Q6P9A3 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC19.49■□□□□ 0.71
ZNF549Q6P9A3 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
ZNF549Q6P9A3 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC19.49■□□□□ 0.71
ZNF549Q6P9A3 RPS2P52-201ENST00000469610 820 ntBASIC19.49■□□□□ 0.71
ZNF549Q6P9A3 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC19.49■□□□□ 0.71
ZNF549Q6P9A3 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC19.49■□□□□ 0.71
ZNF549Q6P9A3 PNMA6B-201ENST00000538162 1200 ntBASIC19.49■□□□□ 0.71
ZNF549Q6P9A3 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC19.49■□□□□ 0.71
ZNF549Q6P9A3 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC19.49■□□□□ 0.71
ZNF549Q6P9A3 AC060766.5-201ENST00000590539 871 ntBASIC19.49■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms