Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
RNF4P78317 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
RNF4P78317 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
RNF4P78317 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RNF4P78317 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
RNF4P78317 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC18.23■□□□□ 0.51
RNF4P78317 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
RNF4P78317 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC18.23■□□□□ 0.51
RNF4P78317 YBX1P10-201ENST00000444752 975 ntBASIC18.23■□□□□ 0.51
RNF4P78317 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RNF4P78317 AC008550.1-201ENST00000511500 884 ntBASIC18.23■□□□□ 0.51
RNF4P78317 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
RNF4P78317 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC18.23■□□□□ 0.51
RNF4P78317 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
RNF4P78317 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC18.23■□□□□ 0.51
RNF4P78317 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
RNF4P78317 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RNF4P78317 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC18.23■□□□□ 0.51
RNF4P78317 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC18.23■□□□□ 0.51
RNF4P78317 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RNF4P78317 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RNF4P78317 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
RNF4P78317 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RNF4P78317 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC18.22■□□□□ 0.51
RNF4P78317 AC009237.14-201ENST00000609975 1594 ntBASIC18.22■□□□□ 0.51
RNF4P78317 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC18.22■□□□□ 0.51
RNF4P78317 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
RNF4P78317 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RNF4P78317 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
RNF4P78317 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC18.22■□□□□ 0.51
RNF4P78317 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
RNF4P78317 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
RNF4P78317 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
RNF4P78317 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
RNF4P78317 AC093827.2-201ENST00000512654 315 ntBASIC18.22■□□□□ 0.51
RNF4P78317 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC18.22■□□□□ 0.51
RNF4P78317 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
RNF4P78317 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
RNF4P78317 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC18.22■□□□□ 0.51
RNF4P78317 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC18.22■□□□□ 0.51
RNF4P78317 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
RNF4P78317 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RNF4P78317 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC18.22■□□□□ 0.51
RNF4P78317 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
RNF4P78317 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RNF4P78317 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RNF4P78317 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
RNF4P78317 GOLGA6L3-201ENST00000507199 1679 ntBASIC18.22■□□□□ 0.51
RNF4P78317 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC18.21■□□□□ 0.51
RNF4P78317 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
RNF4P78317 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
RNF4P78317 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC18.21■□□□□ 0.51
RNF4P78317 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC18.21■□□□□ 0.51
RNF4P78317 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
RNF4P78317 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
RNF4P78317 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
RNF4P78317 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC18.21■□□□□ 0.51
RNF4P78317 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC18.21■□□□□ 0.51
RNF4P78317 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC18.21■□□□□ 0.51
RNF4P78317 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RNF4P78317 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC18.21■□□□□ 0.51
RNF4P78317 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
RNF4P78317 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RNF4P78317 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
RNF4P78317 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC18.21■□□□□ 0.51
RNF4P78317 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RNF4P78317 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RNF4P78317 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC18.21■□□□□ 0.51
RNF4P78317 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
RNF4P78317 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC18.2■□□□□ 0.5
RNF4P78317 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RNF4P78317 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RNF4P78317 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC18.2■□□□□ 0.5
RNF4P78317 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC18.2■□□□□ 0.5
RNF4P78317 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RNF4P78317 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC18.2■□□□□ 0.5
RNF4P78317 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC18.2■□□□□ 0.5
RNF4P78317 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
RNF4P78317 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RNF4P78317 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
RNF4P78317 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
RNF4P78317 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
RNF4P78317 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RNF4P78317 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RNF4P78317 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RNF4P78317 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC18.2■□□□□ 0.5
RNF4P78317 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC18.2■□□□□ 0.5
RNF4P78317 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RNF4P78317 RARRES2P10-201ENST00000564312 460 ntBASIC18.2■□□□□ 0.5
RNF4P78317 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
RNF4P78317 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
RNF4P78317 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RNF4P78317 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
RNF4P78317 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RNF4P78317 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RNF4P78317 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RNF4P78317 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RNF4P78317 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
RNF4P78317 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC18.2■□□□□ 0.5
RNF4P78317 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms