Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIM2P55344 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIM2P55344 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIM2P55344 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIM2P55344 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIM2P55344 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIM2P55344 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LIM2P55344 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIM2P55344 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
LIM2P55344 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC18.68■□□□□ 0.58
LIM2P55344 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIM2P55344 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC18.67■□□□□ 0.58
LIM2P55344 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LIM2P55344 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LIM2P55344 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC18.67■□□□□ 0.58
LIM2P55344 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIM2P55344 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
LIM2P55344 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIM2P55344 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
LIM2P55344 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LIM2P55344 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIM2P55344 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LIM2P55344 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIM2P55344 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIM2P55344 FAM201B-201ENST00000458407 597 ntBASIC18.67■□□□□ 0.58
LIM2P55344 AC233263.1-201ENST00000578059 224 ntBASIC18.67■□□□□ 0.58
LIM2P55344 AC006058.3-201ENST00000606217 1069 ntBASIC18.67■□□□□ 0.58
LIM2P55344 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC18.67■□□□□ 0.58
LIM2P55344 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC18.67■□□□□ 0.58
LIM2P55344 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIM2P55344 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LIM2P55344 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIM2P55344 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC18.66■□□□□ 0.58
LIM2P55344 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIM2P55344 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC18.66■□□□□ 0.58
LIM2P55344 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
LIM2P55344 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIM2P55344 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIM2P55344 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LIM2P55344 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC18.66■□□□□ 0.58
LIM2P55344 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC18.66■□□□□ 0.58
LIM2P55344 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
LIM2P55344 PNN-205ENST00000556530 601 ntTSL 2 BASIC18.66■□□□□ 0.58
LIM2P55344 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC18.66■□□□□ 0.58
LIM2P55344 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIM2P55344 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIM2P55344 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIM2P55344 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC18.66■□□□□ 0.58
LIM2P55344 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC18.66■□□□□ 0.58
LIM2P55344 AL158211.5-201ENST00000623583 2518 ntBASIC18.66■□□□□ 0.58
LIM2P55344 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIM2P55344 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIM2P55344 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIM2P55344 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIM2P55344 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIM2P55344 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
LIM2P55344 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC18.66■□□□□ 0.58
LIM2P55344 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIM2P55344 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIM2P55344 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LIM2P55344 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
LIM2P55344 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIM2P55344 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
LIM2P55344 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC18.65■□□□□ 0.58
LIM2P55344 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
LIM2P55344 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC18.65■□□□□ 0.58
LIM2P55344 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC18.65■□□□□ 0.58
LIM2P55344 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LIM2P55344 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
LIM2P55344 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIM2P55344 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LIM2P55344 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LIM2P55344 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC18.65■□□□□ 0.58
LIM2P55344 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
LIM2P55344 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LIM2P55344 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LIM2P55344 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LIM2P55344 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC18.65■□□□□ 0.58
LIM2P55344 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC18.65■□□□□ 0.58
LIM2P55344 AC073648.6-201ENST00000641589 218 ntBASIC18.65■□□□□ 0.58
LIM2P55344 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
LIM2P55344 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LIM2P55344 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LIM2P55344 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LIM2P55344 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIM2P55344 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC18.65■□□□□ 0.58
LIM2P55344 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIM2P55344 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIM2P55344 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC18.64■□□□□ 0.58
LIM2P55344 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
LIM2P55344 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIM2P55344 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
LIM2P55344 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC18.64■□□□□ 0.57
LIM2P55344 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIM2P55344 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIM2P55344 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIM2P55344 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIM2P55344 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC18.64■□□□□ 0.57
LIM2P55344 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC18.64■□□□□ 0.57
LIM2P55344 AC128676.1-201ENST00000454392 318 ntBASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms