Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
SOX2P48431 AC093503.3-201ENST00000624917 2352 ntBASIC17.3■□□□□ 0.36
SOX2P48431 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
SOX2P48431 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC17.3■□□□□ 0.36
SOX2P48431 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SOX2P48431 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SOX2P48431 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SOX2P48431 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SOX2P48431 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
SOX2P48431 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SOX2P48431 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SOX2P48431 KRT16P6-202ENST00000425692 1426 ntBASIC17.3■□□□□ 0.36
SOX2P48431 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SOX2P48431 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SOX2P48431 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC17.29■□□□□ 0.36
SOX2P48431 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SOX2P48431 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC17.29■□□□□ 0.36
SOX2P48431 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC17.29■□□□□ 0.36
SOX2P48431 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SOX2P48431 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC17.29■□□□□ 0.36
SOX2P48431 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SOX2P48431 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SOX2P48431 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
SOX2P48431 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC17.29■□□□□ 0.36
SOX2P48431 TERF1P5-201ENST00000477545 1207 ntBASIC17.29■□□□□ 0.36
SOX2P48431 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC17.29■□□□□ 0.36
SOX2P48431 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SOX2P48431 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SOX2P48431 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC17.29■□□□□ 0.36
SOX2P48431 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SOX2P48431 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
SOX2P48431 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SOX2P48431 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SOX2P48431 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
SOX2P48431 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
SOX2P48431 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC17.29■□□□□ 0.36
SOX2P48431 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SOX2P48431 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC17.29■□□□□ 0.36
SOX2P48431 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SOX2P48431 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC17.28■□□□□ 0.36
SOX2P48431 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
SOX2P48431 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
SOX2P48431 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SOX2P48431 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
SOX2P48431 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
SOX2P48431 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SOX2P48431 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC17.28■□□□□ 0.36
SOX2P48431 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC17.28■□□□□ 0.36
SOX2P48431 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SOX2P48431 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SOX2P48431 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SOX2P48431 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
SOX2P48431 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC17.28■□□□□ 0.36
SOX2P48431 BRI3-207ENST00000539286 699 ntTSL 2 BASIC17.28■□□□□ 0.36
SOX2P48431 AC016405.3-201ENST00000607710 860 ntBASIC17.28■□□□□ 0.36
SOX2P48431 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SOX2P48431 AC010536.3-201ENST00000620306 533 ntBASIC17.28■□□□□ 0.36
SOX2P48431 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
SOX2P48431 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SOX2P48431 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC17.28■□□□□ 0.36
SOX2P48431 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
SOX2P48431 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
SOX2P48431 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SOX2P48431 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
SOX2P48431 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
SOX2P48431 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SOX2P48431 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SOX2P48431 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SOX2P48431 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SOX2P48431 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
SOX2P48431 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
SOX2P48431 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SOX2P48431 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SOX2P48431 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC17.27■□□□□ 0.36
SOX2P48431 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC17.27■□□□□ 0.36
SOX2P48431 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
SOX2P48431 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC17.27■□□□□ 0.36
SOX2P48431 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC17.27■□□□□ 0.36
SOX2P48431 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SOX2P48431 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
SOX2P48431 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SOX2P48431 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
SOX2P48431 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC17.27■□□□□ 0.35
SOX2P48431 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SOX2P48431 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC17.27■□□□□ 0.35
SOX2P48431 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.35
SOX2P48431 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
SOX2P48431 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC17.27■□□□□ 0.35
SOX2P48431 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
SOX2P48431 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SOX2P48431 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SOX2P48431 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SOX2P48431 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC17.26■□□□□ 0.35
SOX2P48431 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SOX2P48431 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SOX2P48431 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SOX2P48431 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SOX2P48431 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC17.26■□□□□ 0.35
SOX2P48431 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SOX2P48431 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms