Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL5A1P20908 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC18.98■□□□□ 0.63
COL5A1P20908 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL5A1P20908 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
COL5A1P20908 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL5A1P20908 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
COL5A1P20908 HLA-A-209ENST00000638375 975 ntBASIC18.97■□□□□ 0.63
COL5A1P20908 AP000550.4-202ENST00000639755 178 ntBASIC18.97■□□□□ 0.63
COL5A1P20908 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL5A1P20908 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL5A1P20908 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
COL5A1P20908 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
COL5A1P20908 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL5A1P20908 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL5A1P20908 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL5A1P20908 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL5A1P20908 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
COL5A1P20908 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC18.97■□□□□ 0.63
COL5A1P20908 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC18.97■□□□□ 0.63
COL5A1P20908 DBP-204ENST00000599385 709 ntTSL 3 BASIC18.97■□□□□ 0.63
COL5A1P20908 ERF-202ENST00000440177 2032 ntTSL 2 BASIC18.97■□□□□ 0.63
COL5A1P20908 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL5A1P20908 KRT16P6-202ENST00000425692 1426 ntBASIC18.97■□□□□ 0.63
COL5A1P20908 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL5A1P20908 DPP3P2-201ENST00000416030 1696 ntBASIC18.96■□□□□ 0.63
COL5A1P20908 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC18.96■□□□□ 0.63
COL5A1P20908 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC18.96■□□□□ 0.63
COL5A1P20908 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC18.96■□□□□ 0.63
COL5A1P20908 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
COL5A1P20908 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
COL5A1P20908 COPS8-203ENST00000409334 794 ntTSL 5 BASIC18.96■□□□□ 0.63
COL5A1P20908 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
COL5A1P20908 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
COL5A1P20908 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
COL5A1P20908 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC18.96■□□□□ 0.63
COL5A1P20908 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL5A1P20908 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC18.96■□□□□ 0.63
COL5A1P20908 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL5A1P20908 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL5A1P20908 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
COL5A1P20908 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL5A1P20908 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
COL5A1P20908 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
COL5A1P20908 PLK5-205ENST00000642079 1969 ntBASIC18.96■□□□□ 0.63
COL5A1P20908 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL5A1P20908 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL5A1P20908 BX664615.1-201ENST00000443558 458 ntBASIC18.95■□□□□ 0.62
COL5A1P20908 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC18.95■□□□□ 0.62
COL5A1P20908 TOLLIP-AS1-201ENST00000530897 939 ntBASIC18.95■□□□□ 0.62
COL5A1P20908 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL5A1P20908 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC18.95■□□□□ 0.62
COL5A1P20908 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL5A1P20908 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC18.95■□□□□ 0.62
COL5A1P20908 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
COL5A1P20908 RNF152P1-201ENST00000397754 604 ntBASIC18.95■□□□□ 0.62
COL5A1P20908 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC18.95■□□□□ 0.62
COL5A1P20908 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC18.95■□□□□ 0.62
COL5A1P20908 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC18.95■□□□□ 0.62
COL5A1P20908 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC18.95■□□□□ 0.62
COL5A1P20908 AC116562.4-202ENST00000641738 218 ntBASIC18.95■□□□□ 0.62
COL5A1P20908 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC18.95■□□□□ 0.62
COL5A1P20908 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL5A1P20908 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC18.95■□□□□ 0.62
COL5A1P20908 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
COL5A1P20908 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC18.94■□□□□ 0.62
COL5A1P20908 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
COL5A1P20908 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC18.94■□□□□ 0.62
COL5A1P20908 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL5A1P20908 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL5A1P20908 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
COL5A1P20908 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL5A1P20908 SLC25A1P2-201ENST00000430693 912 ntBASIC18.94■□□□□ 0.62
COL5A1P20908 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
COL5A1P20908 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC18.94■□□□□ 0.62
COL5A1P20908 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL5A1P20908 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC18.94■□□□□ 0.62
COL5A1P20908 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL5A1P20908 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL5A1P20908 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC18.94■□□□□ 0.62
COL5A1P20908 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL5A1P20908 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC18.94■□□□□ 0.62
COL5A1P20908 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC18.93■□□□□ 0.62
COL5A1P20908 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC18.93■□□□□ 0.62
COL5A1P20908 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL5A1P20908 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC18.93■□□□□ 0.62
COL5A1P20908 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL5A1P20908 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL5A1P20908 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC18.93■□□□□ 0.62
COL5A1P20908 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL5A1P20908 COPE-203ENST00000351079 907 ntTSL 2 BASIC18.93■□□□□ 0.62
COL5A1P20908 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC18.93■□□□□ 0.62
COL5A1P20908 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC18.93■□□□□ 0.62
COL5A1P20908 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC18.93■□□□□ 0.62
COL5A1P20908 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC18.93■□□□□ 0.62
COL5A1P20908 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL5A1P20908 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL5A1P20908 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL5A1P20908 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL5A1P20908 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
COL5A1P20908 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 84.3 ms