Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
SNX3O60493 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC19.38■□□□□ 0.69
SNX3O60493 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC19.38■□□□□ 0.69
SNX3O60493 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
SNX3O60493 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC19.38■□□□□ 0.69
SNX3O60493 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
SNX3O60493 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SNX3O60493 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SNX3O60493 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC19.37■□□□□ 0.69
SNX3O60493 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SNX3O60493 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SNX3O60493 AC093525.10-201ENST00000625130 1569 ntBASIC19.37■□□□□ 0.69
SNX3O60493 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SNX3O60493 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SNX3O60493 AC091799.1-201ENST00000422823 811 ntBASIC19.37■□□□□ 0.69
SNX3O60493 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC19.37■□□□□ 0.69
SNX3O60493 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC19.37■□□□□ 0.69
SNX3O60493 MIR4767-201ENST00000582827 78 ntBASIC19.37■□□□□ 0.69
SNX3O60493 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SNX3O60493 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC19.37■□□□□ 0.69
SNX3O60493 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
SNX3O60493 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SNX3O60493 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC19.37■□□□□ 0.69
SNX3O60493 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SNX3O60493 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
SNX3O60493 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC19.37■□□□□ 0.69
SNX3O60493 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SNX3O60493 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SNX3O60493 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC19.37■□□□□ 0.69
SNX3O60493 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SNX3O60493 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SNX3O60493 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SNX3O60493 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
SNX3O60493 PTBP1P-201ENST00000554374 1601 ntBASIC19.36■□□□□ 0.69
SNX3O60493 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC19.36■□□□□ 0.69
SNX3O60493 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SNX3O60493 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC19.36■□□□□ 0.69
SNX3O60493 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC19.36■□□□□ 0.69
SNX3O60493 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC19.36■□□□□ 0.69
SNX3O60493 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SNX3O60493 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC19.36■□□□□ 0.69
SNX3O60493 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SNX3O60493 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC19.36■□□□□ 0.69
SNX3O60493 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SNX3O60493 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SNX3O60493 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SNX3O60493 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SNX3O60493 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC19.36■□□□□ 0.69
SNX3O60493 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SNX3O60493 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SNX3O60493 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
SNX3O60493 Z98044.1-201ENST00000632503 1764 ntBASIC19.36■□□□□ 0.69
SNX3O60493 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
SNX3O60493 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SNX3O60493 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
SNX3O60493 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC19.36■□□□□ 0.69
SNX3O60493 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SNX3O60493 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SNX3O60493 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC19.35■□□□□ 0.69
SNX3O60493 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
SNX3O60493 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SNX3O60493 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC19.35■□□□□ 0.69
SNX3O60493 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SNX3O60493 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SNX3O60493 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
SNX3O60493 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SNX3O60493 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SNX3O60493 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SNX3O60493 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SNX3O60493 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
SNX3O60493 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SNX3O60493 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SNX3O60493 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SNX3O60493 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SNX3O60493 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC19.35■□□□□ 0.69
SNX3O60493 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC19.35■□□□□ 0.69
SNX3O60493 SRR-208ENST00000576848 588 ntTSL 4 BASIC19.35■□□□□ 0.69
SNX3O60493 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC19.35■□□□□ 0.69
SNX3O60493 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
SNX3O60493 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
SNX3O60493 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SNX3O60493 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
SNX3O60493 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SNX3O60493 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SNX3O60493 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
SNX3O60493 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SNX3O60493 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC19.35■□□□□ 0.69
SNX3O60493 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
SNX3O60493 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC19.35■□□□□ 0.69
SNX3O60493 AC141586.3-201ENST00000562166 1838 ntBASIC19.35■□□□□ 0.69
SNX3O60493 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SNX3O60493 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC19.34■□□□□ 0.69
SNX3O60493 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC19.34■□□□□ 0.69
SNX3O60493 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
SNX3O60493 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC19.34■□□□□ 0.69
SNX3O60493 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SNX3O60493 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC19.34■□□□□ 0.69
SNX3O60493 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC19.34■□□□□ 0.69
SNX3O60493 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
SNX3O60493 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms