Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC18.3■□□□□ 0.52
HMGN4O00479 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGN4O00479 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HMGN4O00479 TFP1-202ENST00000475455 1573 ntBASIC18.3■□□□□ 0.52
HMGN4O00479 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGN4O00479 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
HMGN4O00479 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGN4O00479 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGN4O00479 AP000974.1-201ENST00000623909 2387 ntBASIC18.3■□□□□ 0.52
HMGN4O00479 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGN4O00479 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGN4O00479 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC18.3■□□□□ 0.52
HMGN4O00479 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGN4O00479 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HMGN4O00479 GGT1-206ENST00000404223 952 ntTSL 2 BASIC18.3■□□□□ 0.52
HMGN4O00479 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC18.3■□□□□ 0.52
HMGN4O00479 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC18.3■□□□□ 0.52
HMGN4O00479 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC18.3■□□□□ 0.52
HMGN4O00479 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC18.3■□□□□ 0.52
HMGN4O00479 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGN4O00479 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGN4O00479 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGN4O00479 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HMGN4O00479 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HMGN4O00479 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HMGN4O00479 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGN4O00479 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGN4O00479 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC18.3■□□□□ 0.52
HMGN4O00479 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGN4O00479 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC18.29■□□□□ 0.52
HMGN4O00479 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
HMGN4O00479 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGN4O00479 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HMGN4O00479 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGN4O00479 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HMGN4O00479 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
HMGN4O00479 SLC29A4P1-201ENST00000398760 971 ntBASIC18.29■□□□□ 0.52
HMGN4O00479 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC18.29■□□□□ 0.52
HMGN4O00479 TSPY6P-201ENST00000448518 926 ntBASIC18.29■□□□□ 0.52
HMGN4O00479 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC18.29■□□□□ 0.52
HMGN4O00479 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGN4O00479 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC18.29■□□□□ 0.52
HMGN4O00479 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC18.29■□□□□ 0.52
HMGN4O00479 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC18.29■□□□□ 0.52
HMGN4O00479 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC18.29■□□□□ 0.52
HMGN4O00479 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC18.29■□□□□ 0.52
HMGN4O00479 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HMGN4O00479 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGN4O00479 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
HMGN4O00479 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC18.29■□□□□ 0.52
HMGN4O00479 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGN4O00479 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGN4O00479 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGN4O00479 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HMGN4O00479 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC18.29■□□□□ 0.52
HMGN4O00479 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HMGN4O00479 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGN4O00479 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC18.29■□□□□ 0.52
HMGN4O00479 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC18.29■□□□□ 0.52
HMGN4O00479 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC18.28■□□□□ 0.52
HMGN4O00479 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC18.28■□□□□ 0.52
HMGN4O00479 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGN4O00479 PTGES2-AS1-201ENST00000443493 2100 ntBASIC18.28■□□□□ 0.52
HMGN4O00479 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGN4O00479 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC18.28■□□□□ 0.52
HMGN4O00479 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGN4O00479 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGN4O00479 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC18.28■□□□□ 0.52
HMGN4O00479 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC18.28■□□□□ 0.52
HMGN4O00479 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
HMGN4O00479 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC18.28■□□□□ 0.52
HMGN4O00479 RER1-204ENST00000378518 522 ntTSL 3 BASIC18.28■□□□□ 0.52
HMGN4O00479 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
HMGN4O00479 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
HMGN4O00479 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC18.28■□□□□ 0.52
HMGN4O00479 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC18.28■□□□□ 0.52
HMGN4O00479 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC18.28■□□□□ 0.52
HMGN4O00479 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC18.28■□□□□ 0.52
HMGN4O00479 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
HMGN4O00479 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
HMGN4O00479 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGN4O00479 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGN4O00479 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGN4O00479 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC18.28■□□□□ 0.52
HMGN4O00479 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC18.28■□□□□ 0.52
HMGN4O00479 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
HMGN4O00479 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HMGN4O00479 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HMGN4O00479 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
HMGN4O00479 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
HMGN4O00479 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HMGN4O00479 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HMGN4O00479 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
HMGN4O00479 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HMGN4O00479 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC18.27■□□□□ 0.52
HMGN4O00479 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HMGN4O00479 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
HMGN4O00479 MAP2K4P1-201ENST00000438453 1195 ntBASIC18.27■□□□□ 0.52
HMGN4O00479 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC18.27■□□□□ 0.52
HMGN4O00479 BET1L-207ENST00000529614 560 ntTSL 5 BASIC18.27■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms