Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TMX2-CTNND1H3BSU7 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
TMX2-CTNND1H3BSU7 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TMX2-CTNND1H3BSU7 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TMX2-CTNND1H3BSU7 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC19.31■□□□□ 0.68
TMX2-CTNND1H3BSU7 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
TMX2-CTNND1H3BSU7 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC19.31■□□□□ 0.68
TMX2-CTNND1H3BSU7 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
TMX2-CTNND1H3BSU7 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
TMX2-CTNND1H3BSU7 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
TMX2-CTNND1H3BSU7 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TMX2-CTNND1H3BSU7 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC19.31■□□□□ 0.68
TMX2-CTNND1H3BSU7 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC19.31■□□□□ 0.68
TMX2-CTNND1H3BSU7 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC19.31■□□□□ 0.68
TMX2-CTNND1H3BSU7 AC133561.5-201ENST00000635547 218 ntBASIC19.31■□□□□ 0.68
TMX2-CTNND1H3BSU7 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
TMX2-CTNND1H3BSU7 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TMX2-CTNND1H3BSU7 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
TMX2-CTNND1H3BSU7 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC19.31■□□□□ 0.68
TMX2-CTNND1H3BSU7 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
TMX2-CTNND1H3BSU7 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TMX2-CTNND1H3BSU7 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TMX2-CTNND1H3BSU7 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
TMX2-CTNND1H3BSU7 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TMX2-CTNND1H3BSU7 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC19.31■□□□□ 0.68
TMX2-CTNND1H3BSU7 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
TMX2-CTNND1H3BSU7 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC19.3■□□□□ 0.68
TMX2-CTNND1H3BSU7 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
TMX2-CTNND1H3BSU7 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TMX2-CTNND1H3BSU7 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
TMX2-CTNND1H3BSU7 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TMX2-CTNND1H3BSU7 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TMX2-CTNND1H3BSU7 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
TMX2-CTNND1H3BSU7 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC19.3■□□□□ 0.68
TMX2-CTNND1H3BSU7 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TMX2-CTNND1H3BSU7 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
TMX2-CTNND1H3BSU7 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TMX2-CTNND1H3BSU7 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
TMX2-CTNND1H3BSU7 HES2-206ENST00000489730 730 ntTSL 2 BASIC19.3■□□□□ 0.68
TMX2-CTNND1H3BSU7 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TMX2-CTNND1H3BSU7 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC19.3■□□□□ 0.68
TMX2-CTNND1H3BSU7 PENK-204ENST00000518770 863 ntTSL 2 BASIC19.3■□□□□ 0.68
TMX2-CTNND1H3BSU7 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TMX2-CTNND1H3BSU7 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TMX2-CTNND1H3BSU7 AC073314.1-201ENST00000568729 2216 ntBASIC19.3■□□□□ 0.68
TMX2-CTNND1H3BSU7 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TMX2-CTNND1H3BSU7 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TMX2-CTNND1H3BSU7 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TMX2-CTNND1H3BSU7 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC19.3■□□□□ 0.68
TMX2-CTNND1H3BSU7 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TMX2-CTNND1H3BSU7 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TMX2-CTNND1H3BSU7 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TMX2-CTNND1H3BSU7 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TMX2-CTNND1H3BSU7 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TMX2-CTNND1H3BSU7 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
TMX2-CTNND1H3BSU7 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
TMX2-CTNND1H3BSU7 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TMX2-CTNND1H3BSU7 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TMX2-CTNND1H3BSU7 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
TMX2-CTNND1H3BSU7 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TMX2-CTNND1H3BSU7 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TMX2-CTNND1H3BSU7 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TMX2-CTNND1H3BSU7 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
TMX2-CTNND1H3BSU7 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC19.29■□□□□ 0.68
TMX2-CTNND1H3BSU7 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TMX2-CTNND1H3BSU7 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
TMX2-CTNND1H3BSU7 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TMX2-CTNND1H3BSU7 TREX2-204ENST00000370212 861 ntTSL 5 BASIC19.29■□□□□ 0.68
TMX2-CTNND1H3BSU7 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
TMX2-CTNND1H3BSU7 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
TMX2-CTNND1H3BSU7 AC087499.1-201ENST00000418141 1075 ntBASIC19.29■□□□□ 0.68
TMX2-CTNND1H3BSU7 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TMX2-CTNND1H3BSU7 AL355355.2-201ENST00000442321 338 ntBASIC19.29■□□□□ 0.68
TMX2-CTNND1H3BSU7 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC19.29■□□□□ 0.68
TMX2-CTNND1H3BSU7 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TMX2-CTNND1H3BSU7 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC19.29■□□□□ 0.68
TMX2-CTNND1H3BSU7 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC19.29■□□□□ 0.68
TMX2-CTNND1H3BSU7 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TMX2-CTNND1H3BSU7 AC004264.1-201ENST00000608354 794 ntBASIC19.29■□□□□ 0.68
TMX2-CTNND1H3BSU7 AL121906.2-201ENST00000621597 723 ntBASIC19.29■□□□□ 0.68
TMX2-CTNND1H3BSU7 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC19.29■□□□□ 0.68
TMX2-CTNND1H3BSU7 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TMX2-CTNND1H3BSU7 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TMX2-CTNND1H3BSU7 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TMX2-CTNND1H3BSU7 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC19.29■□□□□ 0.68
TMX2-CTNND1H3BSU7 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TMX2-CTNND1H3BSU7 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TMX2-CTNND1H3BSU7 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TMX2-CTNND1H3BSU7 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
TMX2-CTNND1H3BSU7 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
TMX2-CTNND1H3BSU7 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TMX2-CTNND1H3BSU7 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TMX2-CTNND1H3BSU7 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TMX2-CTNND1H3BSU7 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
TMX2-CTNND1H3BSU7 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC19.28■□□□□ 0.68
TMX2-CTNND1H3BSU7 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC19.28■□□□□ 0.68
TMX2-CTNND1H3BSU7 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC19.28■□□□□ 0.68
TMX2-CTNND1H3BSU7 AC026471.5-201ENST00000615068 467 ntBASIC19.28■□□□□ 0.68
TMX2-CTNND1H3BSU7 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TMX2-CTNND1H3BSU7 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms