Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 LINC01533-201ENST00000585739 616 ntTSL 5 BASIC4.42□□□□□ -1.7
HLA-DMBP28068 AC011478.1-201ENST00000593140 554 ntTSL 4 BASIC4.42□□□□□ -1.7
HLA-DMBP28068 LINC01125-249ENST00000627399 1067 ntAPPRIS P5 TSL 5 BASIC4.42□□□□□ -1.7
HLA-DMBP28068 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
HLA-DMBP28068 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC4.42□□□□□ -1.7
HLA-DMBP28068 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC4.42□□□□□ -1.7
HLA-DMBP28068 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
HLA-DMBP28068 AC068870.3-201ENST00000625077 2536 ntBASIC4.42□□□□□ -1.7
HLA-DMBP28068 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC4.42□□□□□ -1.7
HLA-DMBP28068 WDYHV1-208ENST00000523984 1491 ntTSL 2 BASIC4.42□□□□□ -1.7
HLA-DMBP28068 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
HLA-DMBP28068 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC4.42□□□□□ -1.7
HLA-DMBP28068 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
HLA-DMBP28068 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
HLA-DMBP28068 AL354854.1-201ENST00000455940 1363 ntBASIC4.41□□□□□ -1.7
HLA-DMBP28068 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC4.41□□□□□ -1.7
HLA-DMBP28068 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
HLA-DMBP28068 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
HLA-DMBP28068 RRM1-201ENST00000300738 3076 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
HLA-DMBP28068 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
HLA-DMBP28068 SELENOWP1-201ENST00000322792 252 ntBASIC4.41□□□□□ -1.7
HLA-DMBP28068 OR52B6-201ENST00000345043 1008 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
HLA-DMBP28068 RN7SKP81-201ENST00000365603 331 ntBASIC4.41□□□□□ -1.7
HLA-DMBP28068 FETUB-203ENST00000382136 1040 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
HLA-DMBP28068 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
HLA-DMBP28068 RNA5SP91-201ENST00000390902 119 ntBASIC4.41□□□□□ -1.7
HLA-DMBP28068 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC4.41□□□□□ -1.7
HLA-DMBP28068 AC068631.1-204ENST00000428501 534 ntTSL 3 BASIC4.41□□□□□ -1.7
HLA-DMBP28068 AP000295.1-201ENST00000433395 1000 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
HLA-DMBP28068 AC096775.1-201ENST00000437724 448 ntBASIC4.41□□□□□ -1.7
HLA-DMBP28068 AC023141.8-201ENST00000442554 208 ntBASIC4.41□□□□□ -1.7
HLA-DMBP28068 IQCJ-SCHIP1-AS1-201ENST00000460574 508 ntTSL 3 BASIC4.41□□□□□ -1.7
HLA-DMBP28068 RN7SL72P-201ENST00000460697 269 ntBASIC4.41□□□□□ -1.7
HLA-DMBP28068 AC117386.2-203ENST00000489690 557 ntTSL 3 BASIC4.41□□□□□ -1.7
HLA-DMBP28068 LSM3P4-201ENST00000502948 309 ntBASIC4.41□□□□□ -1.7
HLA-DMBP28068 HAND2-AS1-233ENST00000515345 797 ntTSL 3 BASIC4.41□□□□□ -1.7
HLA-DMBP28068 RN7SKP238-201ENST00000516483 249 ntBASIC4.41□□□□□ -1.7
HLA-DMBP28068 AC008601.1-201ENST00000519892 527 ntTSL 4 BASIC4.41□□□□□ -1.7
HLA-DMBP28068 AC090155.1-201ENST00000520800 407 ntTSL 3 BASIC4.41□□□□□ -1.7
HLA-DMBP28068 AP003396.4-201ENST00000527574 265 ntBASIC4.41□□□□□ -1.7
HLA-DMBP28068 AP001893.1-201ENST00000532866 362 ntTSL 5 BASIC4.41□□□□□ -1.7
HLA-DMBP28068 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC4.41□□□□□ -1.7
HLA-DMBP28068 AC079905.1-201ENST00000549280 475 ntBASIC4.41□□□□□ -1.7
HLA-DMBP28068 PSMA4-209ENST00000559082 1094 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
HLA-DMBP28068 AC023906.3-201ENST00000559825 874 ntTSL 5 BASIC4.41□□□□□ -1.7
HLA-DMBP28068 AC092123.1-202ENST00000565310 405 ntTSL 3 BASIC4.41□□□□□ -1.7
HLA-DMBP28068 AC117569.1-201ENST00000584482 739 ntTSL 3 BASIC4.41□□□□□ -1.7
HLA-DMBP28068 AC006115.2-201ENST00000596823 202 ntBASIC4.41□□□□□ -1.7
HLA-DMBP28068 AL353729.2-201ENST00000605859 1249 ntBASIC4.41□□□□□ -1.7
HLA-DMBP28068 ASNSD1-208ENST00000607690 535 ntTSL 2 BASIC4.41□□□□□ -1.7
HLA-DMBP28068 OR51C1P-201ENST00000608504 942 ntBASIC4.41□□□□□ -1.7
HLA-DMBP28068 CCL23-201ENST00000612516 569 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
HLA-DMBP28068 AL445670.1-201ENST00000618889 801 ntBASIC4.41□□□□□ -1.7
HLA-DMBP28068 MALAT1-214ENST00000618925 424 ntTSL 5 BASIC4.41□□□□□ -1.7
HLA-DMBP28068 ELSPBP1-206ENST00000619003 893 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
HLA-DMBP28068 AC096708.4-201ENST00000620563 552 ntBASIC4.41□□□□□ -1.7
HLA-DMBP28068 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
HLA-DMBP28068 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
HLA-DMBP28068 MUT-201ENST00000274813 3749 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
HLA-DMBP28068 RASSF8-216ENST00000615708 1328 ntTSL 5 BASIC4.41□□□□□ -1.7
HLA-DMBP28068 LINC01204-202ENST00000435394 2214 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
HLA-DMBP28068 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
HLA-DMBP28068 PARP4P2-201ENST00000446672 3326 ntBASIC4.41□□□□□ -1.7
HLA-DMBP28068 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
HLA-DMBP28068 TCP11X1-202ENST00000622971 1372 ntBASIC4.4□□□□□ -1.7
HLA-DMBP28068 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC4.4□□□□□ -1.7
HLA-DMBP28068 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.7
HLA-DMBP28068 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.7
HLA-DMBP28068 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC4.4□□□□□ -1.7
HLA-DMBP28068 POLE2-206ENST00000554396 1581 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
HLA-DMBP28068 CASC19-238ENST00000641523 1558 ntBASIC4.4□□□□□ -1.7
HLA-DMBP28068 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.7
HLA-DMBP28068 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC4.4□□□□□ -1.7
HLA-DMBP28068 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC4.4□□□□□ -1.7
HLA-DMBP28068 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
HLA-DMBP28068 RBPJP7-201ENST00000442803 1447 ntBASIC4.4□□□□□ -1.7
HLA-DMBP28068 RBPJP5-201ENST00000449433 1447 ntBASIC4.4□□□□□ -1.7
HLA-DMBP28068 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC4.4□□□□□ -1.7
HLA-DMBP28068 TEK-205ENST00000615002 4666 ntTSL 5 BASIC4.4□□□□□ -1.7
HLA-DMBP28068 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
HLA-DMBP28068 AP005435.3-201ENST00000531260 3198 ntBASIC4.4□□□□□ -1.7
HLA-DMBP28068 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC4.4□□□□□ -1.7
HLA-DMBP28068 LYPD6B-201ENST00000280115 1100 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.71
HLA-DMBP28068 FIG4-202ENST00000368941 791 ntTSL 3 BASIC4.4□□□□□ -1.71
HLA-DMBP28068 ZCCHC6-203ENST00000375948 958 ntTSL 2 BASIC4.4□□□□□ -1.71
HLA-DMBP28068 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
HLA-DMBP28068 OR51B4-201ENST00000380224 933 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
HLA-DMBP28068 MIR130B-202ENST00000385018 82 ntBASIC4.4□□□□□ -1.71
HLA-DMBP28068 AC087752.1-201ENST00000391360 558 ntBASIC4.4□□□□□ -1.71
HLA-DMBP28068 AL096711.1-201ENST00000404780 554 ntBASIC4.4□□□□□ -1.71
HLA-DMBP28068 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC4.4□□□□□ -1.71
HLA-DMBP28068 AL354890.1-201ENST00000413730 346 ntBASIC4.4□□□□□ -1.71
HLA-DMBP28068 LINC01760-201ENST00000423410 382 ntTSL 2 BASIC4.4□□□□□ -1.71
HLA-DMBP28068 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC4.4□□□□□ -1.71
HLA-DMBP28068 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
HLA-DMBP28068 AL353751.1-203ENST00000437032 603 ntTSL 3 BASIC4.4□□□□□ -1.71
HLA-DMBP28068 RPL12P18-201ENST00000437175 325 ntBASIC4.4□□□□□ -1.71
HLA-DMBP28068 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC4.4□□□□□ -1.71
HLA-DMBP28068 TRIM60P16-201ENST00000444048 694 ntBASIC4.4□□□□□ -1.71
HLA-DMBP28068 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC4.4□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 125.5 ms