Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC126474.2-201ENST00000623268 1750 ntBASIC6.96□□□□□ -1.3
COL8A1P27658 ATP2B1-204ENST00000428670 7032 ntAPPRIS P1 TSL 5 BASIC6.96□□□□□ -1.3
COL8A1P27658 CPNE8-201ENST00000331366 3489 ntAPPRIS P2 TSL 1 (best) BASIC6.96□□□□□ -1.3
COL8A1P27658 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
COL8A1P27658 RN7SKP211-201ENST00000363328 315 ntBASIC6.96□□□□□ -1.3
COL8A1P27658 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC6.96□□□□□ -1.3
COL8A1P27658 SNRNP40-202ENST00000373720 1087 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
COL8A1P27658 RNU6-1105P-201ENST00000384774 107 ntBASIC6.96□□□□□ -1.3
COL8A1P27658 AC090114.1-201ENST00000393266 448 ntBASIC6.96□□□□□ -1.3
COL8A1P27658 CCNYL3-201ENST00000407030 998 ntBASIC6.96□□□□□ -1.3
COL8A1P27658 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC6.96□□□□□ -1.3
COL8A1P27658 MICG-208ENST00000416822 132 ntBASIC6.96□□□□□ -1.3
COL8A1P27658 AIMP1P1-201ENST00000418670 937 ntBASIC6.96□□□□□ -1.3
COL8A1P27658 OR1AA1P-201ENST00000419597 916 ntBASIC6.96□□□□□ -1.3
COL8A1P27658 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC6.96□□□□□ -1.3
COL8A1P27658 EIF4A1P2-201ENST00000422633 1220 ntBASIC6.96□□□□□ -1.3
COL8A1P27658 AC090044.1-201ENST00000423193 497 ntTSL 2 BASIC6.96□□□□□ -1.3
COL8A1P27658 AC003071.2-201ENST00000423857 315 ntBASIC6.96□□□□□ -1.3
COL8A1P27658 OR5M13P-201ENST00000433944 937 ntBASIC6.96□□□□□ -1.3
COL8A1P27658 CLUHP1-201ENST00000435012 1190 ntBASIC6.96□□□□□ -1.3
COL8A1P27658 LINC00350-201ENST00000438640 422 ntTSL 5 BASIC6.96□□□□□ -1.3
COL8A1P27658 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC6.96□□□□□ -1.3
COL8A1P27658 AC027124.1-201ENST00000440852 466 ntBASIC6.96□□□□□ -1.3
COL8A1P27658 HSPE1P28-201ENST00000443139 211 ntBASIC6.96□□□□□ -1.3
COL8A1P27658 LINC01015-204ENST00000445296 399 ntTSL 3 BASIC6.96□□□□□ -1.3
COL8A1P27658 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC6.96□□□□□ -1.3
COL8A1P27658 PDSS1P2-201ENST00000449397 678 ntBASIC6.96□□□□□ -1.3
COL8A1P27658 AL391863.1-202ENST00000457427 612 ntTSL 5 BASIC6.96□□□□□ -1.3
COL8A1P27658 TFP1-201ENST00000460564 572 ntTSL 4 BASIC6.96□□□□□ -1.3
COL8A1P27658 AL590326.1-201ENST00000460857 334 ntBASIC6.96□□□□□ -1.3
COL8A1P27658 AL049650.1-201ENST00000461548 823 ntAPPRIS P1 TSL 5 BASIC6.96□□□□□ -1.3
COL8A1P27658 RN7SL456P-201ENST00000469290 295 ntBASIC6.96□□□□□ -1.3
COL8A1P27658 DLEU1-212ENST00000469754 2955 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
COL8A1P27658 RPS4XP15-201ENST00000489210 795 ntBASIC6.96□□□□□ -1.3
COL8A1P27658 TFP1-203ENST00000490470 561 ntTSL 4 BASIC6.96□□□□□ -1.3
COL8A1P27658 RPL39P36-201ENST00000490784 156 ntBASIC6.96□□□□□ -1.3
COL8A1P27658 ZNF525-204ENST00000491101 569 ntTSL 4 BASIC6.96□□□□□ -1.3
COL8A1P27658 AC105914.1-201ENST00000511798 226 ntBASIC6.96□□□□□ -1.3
COL8A1P27658 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC6.96□□□□□ -1.3
COL8A1P27658 AC084026.2-201ENST00000521101 642 ntTSL 3 BASIC6.96□□□□□ -1.3
COL8A1P27658 HSPA8P13-201ENST00000523715 472 ntBASIC6.96□□□□□ -1.3
COL8A1P27658 BTG1P1-201ENST00000540396 508 ntBASIC6.96□□□□□ -1.3
COL8A1P27658 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC6.96□□□□□ -1.3
COL8A1P27658 OR7K1P-201ENST00000546439 926 ntBASIC6.96□□□□□ -1.3
COL8A1P27658 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC6.96□□□□□ -1.3
COL8A1P27658 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC6.96□□□□□ -1.3
COL8A1P27658 AC044860.3-201ENST00000559957 368 ntBASIC6.96□□□□□ -1.3
COL8A1P27658 AC142086.3-201ENST00000563896 802 ntBASIC6.96□□□□□ -1.3
COL8A1P27658 TTN-AS1-210ENST00000578746 677 ntTSL 3 BASIC6.96□□□□□ -1.3
COL8A1P27658 AC087301.1-201ENST00000579037 321 ntTSL 3 BASIC6.96□□□□□ -1.3
COL8A1P27658 AC138207.8-204ENST00000579588 527 ntBASIC6.96□□□□□ -1.3
COL8A1P27658 AC090415.1-201ENST00000581877 847 ntBASIC6.96□□□□□ -1.3
COL8A1P27658 UBE2L4-201ENST00000587688 464 ntBASIC6.96□□□□□ -1.3
COL8A1P27658 AC008736.1-201ENST00000592431 568 ntTSL 2 BASIC6.96□□□□□ -1.3
COL8A1P27658 AC007687.1-201ENST00000602704 304 ntBASIC6.96□□□□□ -1.3
COL8A1P27658 AC012510.1-201ENST00000607946 759 ntBASIC6.96□□□□□ -1.3
COL8A1P27658 AL133215.3-201ENST00000609801 448 ntBASIC6.96□□□□□ -1.3
COL8A1P27658 TRBV10-3-201ENST00000611462 368 ntAPPRIS P1 BASIC6.96□□□□□ -1.3
COL8A1P27658 HMGB1P24-202ENST00000615653 685 ntBASIC6.96□□□□□ -1.3
COL8A1P27658 AL158801.5-201ENST00000623123 465 ntBASIC6.96□□□□□ -1.3
COL8A1P27658 AC135068.11-201ENST00000636378 921 ntBASIC6.96□□□□□ -1.3
COL8A1P27658 HINFP-201ENST00000350777 3163 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
COL8A1P27658 LTBP1-202ENST00000404525 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC6.96□□□□□ -1.3
COL8A1P27658 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC6.96□□□□□ -1.3
COL8A1P27658 CIITA-201ENST00000324288 11952 ntAPPRIS P3 TSL 1 (best) BASIC6.96□□□□□ -1.3
COL8A1P27658 GON4L-219ENST00000622608 4801 ntTSL 5 BASIC6.96□□□□□ -1.3
COL8A1P27658 HRG-201ENST00000232003 2015 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
COL8A1P27658 MED31-201ENST00000225728 1654 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
COL8A1P27658 HHAT-203ENST00000367010 3626 ntAPPRIS P1 TSL 2 BASIC6.96□□□□□ -1.3
COL8A1P27658 TRIM6-203ENST00000380107 2590 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
COL8A1P27658 PDXDC1-203ENST00000450288 4171 ntTSL 5 BASIC6.96□□□□□ -1.3
COL8A1P27658 PPFIA2-204ENST00000541017 4192 ntTSL 2 BASIC6.96□□□□□ -1.3
COL8A1P27658 ZKSCAN5-203ENST00000451158 3111 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
COL8A1P27658 NFRKB-203ENST00000524794 4351 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
COL8A1P27658 ZNF569-202ENST00000392149 3689 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
COL8A1P27658 NELL1-201ENST00000298925 3329 ntAPPRIS ALT2 TSL 2 BASIC6.96□□□□□ -1.3
COL8A1P27658 CYCS-201ENST00000305786 4098 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
COL8A1P27658 HTR2A-201ENST00000378688 4835 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
COL8A1P27658 WDR87-202ENST00000447313 9009 ntAPPRIS ALT2 TSL 2 BASIC6.95□□□□□ -1.3
COL8A1P27658 AL138756.1-201ENST00000563434 4488 ntTSL 2 BASIC6.95□□□□□ -1.3
COL8A1P27658 MYO6-202ENST00000369977 5597 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL8A1P27658 LAX1-202ENST00000367217 1356 ntAPPRIS ALT2 TSL 2 BASIC6.95□□□□□ -1.3
COL8A1P27658 GTF2IP12-202ENST00000634317 5052 ntTSL 5 BASIC6.95□□□□□ -1.3
COL8A1P27658 KIAA0100-203ENST00000544884 6856 ntAPPRIS ALT2 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL8A1P27658 PRLR-213ENST00000514088 1440 ntTSL 5 BASIC6.95□□□□□ -1.3
COL8A1P27658 CHAF1B-201ENST00000314103 4480 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL8A1P27658 PRLR-208ENST00000509140 1610 ntTSL 5 BASIC6.95□□□□□ -1.3
COL8A1P27658 EPS15L1-214ENST00000602009 3915 ntTSL 2 BASIC6.95□□□□□ -1.3
COL8A1P27658 OSBPL3-203ENST00000396431 2969 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
COL8A1P27658 DYNC1I2P1-201ENST00000435916 1838 ntBASIC6.95□□□□□ -1.3
COL8A1P27658 MAGI2-214ENST00000628781 2013 ntTSL 2 BASIC6.95□□□□□ -1.3
COL8A1P27658 PAFAH2-201ENST00000374282 3581 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL8A1P27658 TCF4-241ENST00000568740 2628 ntTSL 5 BASIC6.95□□□□□ -1.3
COL8A1P27658 SOCS6-203ENST00000582322 2625 ntAPPRIS P1 TSL 3 BASIC6.95□□□□□ -1.3
COL8A1P27658 MPI-213ENST00000566377 2809 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
COL8A1P27658 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
COL8A1P27658 Y_RNA.86-201ENST00000363020 111 ntBASIC6.95□□□□□ -1.3
COL8A1P27658 Y_RNA.128-201ENST00000363391 112 ntBASIC6.95□□□□□ -1.3
COL8A1P27658 Y_RNA.202-201ENST00000364083 110 ntBASIC6.95□□□□□ -1.3
COL8A1P27658 SNORA4.3-201ENST00000365564 137 ntBASIC6.95□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 70.8 ms