RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 DCAF8L2P0C7V8 631 aa13.51□□□□□ -0.25
CIITA-201ENST00000324288 EHMT2Q96KQ7 1210 aa12.89□□□□□ -0.35
CIITA-201ENST00000324288 SUPT5HO00267 1087 aaKnown RBP12.78□□□□□ -0.36
CIITA-201ENST00000324288 PELP1Q8IZL8 1130 aaKnown RBP12.78□□□□□ -0.36
CIITA-201ENST00000324288 SHROOM4Q9ULL8 1493 aa12.54□□□□□ -0.4
CIITA-201ENST00000324288 ERICH6Q7L0X2 663 aa12.51□□□□□ -0.41
CIITA-201ENST00000324288 TTBK1Q5TCY1 1321 aaPredicted RBP12.47□□□□□ -0.41
CIITA-201ENST00000324288 MYT1Q01538 1121 aa12.37□□□□□ -0.43
CIITA-201ENST00000324288 PCGF6Q9BYE7 350 aa12.33□□□□□ -0.44
CIITA-201ENST00000324288 APLP2Q06481 763 aa12.26□□□□□ -0.45
CIITA-201ENST00000324288 CENPBP07199 599 aaPredicted RBP12.22□□□□□ -0.45
CIITA-201ENST00000324288 FAM9AQ8IZU1 332 aaPredicted RBP12.21□□□□□ -0.45
CIITA-201ENST00000324288 YTHDC1Q96MU7 727 aaKnown RBP12.21□□□□□ -0.46
CIITA-201ENST00000324288 RANGAP1P46060 587 aaPredicted RBP12.2□□□□□ -0.46
CIITA-201ENST00000324288 CCER1Q8TC90 406 aaPredicted RBP12.16□□□□□ -0.46
CIITA-201ENST00000324288 NEFLP07196 543 aa12.03□□□□□ -0.48
CIITA-201ENST00000324288 ATP1B4Q9UN42 357 aaPredicted RBP12□□□□□ -0.49
CIITA-201ENST00000324288 ZEB1P37275 1124 aaPredicted RBP11.89□□□□□ -0.51
CIITA-201ENST00000324288 PPARGC1BQ86YN6 1023 aaKnown RBP11.82□□□□□ -0.52
CIITA-201ENST00000324288 DAXXQ9UER7 740 aaPredicted RBP11.77□□□□□ -0.53
CIITA-201ENST00000324288 NISCHQ9Y2I1 1504 aa11.74□□□□□ -0.53
CIITA-201ENST00000324288 POLR3GLQ9BT43 218 aa11.71□□□□□ -0.53
CIITA-201ENST00000324288 UBTFP17480 764 aaKnown RBP11.71□□□□□ -0.53
CIITA-201ENST00000324288 CNGB1Q14028 1251 aaPredicted RBP11.71□□□□□ -0.53
CIITA-201ENST00000324288 TRIM41Q8WV44 630 aa11.66□□□□□ -0.54
CIITA-201ENST00000324288 CHIC1Q5VXU3 224 aa11.62□□□□□ -0.55
CIITA-201ENST00000324288 HRCP23327 699 aa11.62□□□□□ -0.55
CIITA-201ENST00000324288 RTL5Q5HYW3 569 aaPredicted RBP11.61□□□□□ -0.55
CIITA-201ENST00000324288 ITGAEP38570 1179 aa11.58□□□□□ -0.56
CIITA-201ENST00000324288 MYT1LQ9UL68 1186 aa11.57□□□□□ -0.56
CIITA-201ENST00000324288 BCANQ96GW7 911 aa11.54□□□□□ -0.56
CIITA-201ENST00000324288 ZNF316A6NFI3 1004 aaPredicted RBP11.54□□□□□ -0.56
CIITA-201ENST00000324288 SLC4A1APQ9BWU0 796 aaKnown RBP11.49□□□□□ -0.57
CIITA-201ENST00000324288 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.45□□□□□ -0.58
CIITA-201ENST00000324288 HNRNPUL2Q1KMD3 747 aaKnown RBP11.45□□□□□ -0.58
CIITA-201ENST00000324288 CLSPNQ9HAW4 1339 aa11.41□□□□□ -0.58
CIITA-201ENST00000324288 TRIM26Q12899 539 aaPredicted RBP11.41□□□□□ -0.58
CIITA-201ENST00000324288 GTF3C3Q9Y5Q9 886 aa11.36□□□□□ -0.59
CIITA-201ENST00000324288 BCL11AQ9H165 835 aa11.34□□□□□ -0.59
CIITA-201ENST00000324288 EIF5BO60841 1220 aaKnown RBP11.33□□□□□ -0.6
CIITA-201ENST00000324288 DIEXFQ68CQ4 756 aaKnown RBP11.31□□□□□ -0.6
CIITA-201ENST00000324288 LOC105371045A0A1W2PR82 267 aa11.31□□□□□ -0.6
CIITA-201ENST00000324288 CDK11AQ9UQ88 783 aaPredicted RBP11.21□□□□□ -0.61
CIITA-201ENST00000324288 NPM2Q86SE8 214 aaKnown RBP11.2□□□□□ -0.62
CIITA-201ENST00000324288 SLC24A1O60721 1099 aa11.17□□□□□ -0.62
CIITA-201ENST00000324288 ZNF326Q5BKZ1 582 aaKnown RBP11.14□□□□□ -0.63
CIITA-201ENST00000324288 NEUROD1Q13562 356 aa11.13□□□□□ -0.63
CIITA-201ENST00000324288 FAM50AQ14320 339 aaKnown RBP11.12□□□□□ -0.63
CIITA-201ENST00000324288 TRIM52Q96A61 297 aa11.08□□□□□ -0.64
CIITA-201ENST00000324288 NBR1Q14596 966 aa11.07□□□□□ -0.64
CIITA-201ENST00000324288 ACIN1Q9UKV3 1341 aaKnown RBP11.06□□□□□ -0.64
CIITA-201ENST00000324288 ZBTB47Q9UFB7 747 aaPredicted RBP11.05□□□□□ -0.64
CIITA-201ENST00000324288 CANXP27824 592 aaKnown RBP11.05□□□□□ -0.64
CIITA-201ENST00000324288 ARXQ96QS3 562 aa11.05□□□□□ -0.64
CIITA-201ENST00000324288 ANP32AP39687 249 aaKnown RBP11.03□□□□□ -0.64
CIITA-201ENST00000324288 ANP32CO43423 234 aa11□□□□□ -0.65
CIITA-201ENST00000324288 GLIPR1L2Q4G1C9 344 aa10.95□□□□□ -0.66
CIITA-201ENST00000324288 ARID3CA6NKF2 412 aa10.92□□□□□ -0.66
CIITA-201ENST00000324288 FKBP8Q14318 412 aa10.91□□□□□ -0.66
CIITA-201ENST00000324288 PLPPR3Q6T4P5 718 aa10.89□□□□□ -0.67
CIITA-201ENST00000324288 ANP32BQ92688 251 aaKnown RBP10.88□□□□□ -0.67
CIITA-201ENST00000324288 SCAF1Q9H7N4 1312 aaKnown RBP10.85□□□□□ -0.67
CIITA-201ENST00000324288 HSP90AA1P07900 732 aaKnown RBP10.85□□□□□ -0.67
CIITA-201ENST00000324288 FBLN2P98095 1184 aa10.84□□□□□ -0.67
CIITA-201ENST00000324288 IRX6P78412 446 aaPredicted RBP10.82□□□□□ -0.68
CIITA-201ENST00000324288 RTN4Q9NQC3 1192 aaKnown RBP10.81□□□□□ -0.68
CIITA-201ENST00000324288 NEFMP07197 916 aa10.8□□□□□ -0.68
CIITA-201ENST00000324288 P3H3Q8IVL6 736 aa10.76□□□□□ -0.69
CIITA-201ENST00000324288 SALL2Q9Y467 1007 aaPredicted RBP10.75□□□□□ -0.69
CIITA-201ENST00000324288 ZNF777Q9ULD5 760 aaPredicted RBP10.73□□□□□ -0.69
CIITA-201ENST00000324288 PABPN1Q86U42 306 aaKnown RBP eCLIP10.73□□□□□ -0.69
CIITA-201ENST00000324288 AMER1Q5JTC6 1135 aaPredicted RBP10.71□□□□□ -0.7
CIITA-201ENST00000324288 SENP3Q9H4L4 574 aaPredicted RBP10.71□□□□□ -0.7
CIITA-201ENST00000324288 HNRNPUQ00839 825 aaKnown RBP eCLIP10.7□□□□□ -0.7
CIITA-201ENST00000324288 PLEKHG5O94827 1062 aa10.7□□□□□ -0.7
CIITA-201ENST00000324288 FAM9BQ8IZU0 186 aa10.7□□□□□ -0.7
CIITA-201ENST00000324288 A0A0G2JS52 829 aa10.69□□□□□ -0.7
CIITA-201ENST00000324288 CCDC136Q96JN2 1154 aa10.69□□□□□ -0.7
CIITA-201ENST00000324288 CHGAP10645 457 aaKnown RBP10.68□□□□□ -0.7
CIITA-201ENST00000324288 NAP1L5Q96NT1 182 aaPredicted RBP10.67□□□□□ -0.7
CIITA-201ENST00000324288 TPRNQ4KMQ1 711 aa10.67□□□□□ -0.7
CIITA-201ENST00000324288 SENP3-EIF4A1A0A087X0R7 540 aa10.66□□□□□ -0.7
CIITA-201ENST00000324288 DDX10Q13206 875 aaKnown RBP10.66□□□□□ -0.7
CIITA-201ENST00000324288 UPF2Q9HAU5 1272 aaKnown RBP10.65□□□□□ -0.7
CIITA-201ENST00000324288 LAS1LQ9Y4W2 734 aaKnown RBP10.64□□□□□ -0.71
CIITA-201ENST00000324288 TNNT2P45379 298 aaPredicted RBP10.63□□□□□ -0.71
CIITA-201ENST00000324288 STAG3Q9UJ98 1225 aa10.63□□□□□ -0.71
CIITA-201ENST00000324288 ANP32EQ9BTT0 268 aa10.62□□□□□ -0.71
CIITA-201ENST00000324288 ARID4BQ4LE39 1312 aaPredicted RBP10.6□□□□□ -0.71
CIITA-201ENST00000324288 ESF1Q9H501 851 aaKnown RBP10.59□□□□□ -0.71
CIITA-201ENST00000324288 TULP1O00294 542 aaPredicted RBP10.59□□□□□ -0.71
CIITA-201ENST00000324288 MIER1Q8N108 512 aa10.59□□□□□ -0.71
CIITA-201ENST00000324288 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.58□□□□□ -0.72
CIITA-201ENST00000324288 ZBTB7CA1YPR0 619 aa10.58□□□□□ -0.72
CIITA-201ENST00000324288 PTMAP06454 111 aaKnown RBP10.57□□□□□ -0.72
CIITA-201ENST00000324288 NCLP19338 710 aaKnown RBP10.55□□□□□ -0.72
CIITA-201ENST00000324288 TRIM44Q96DX7 344 aaPredicted RBP10.54□□□□□ -0.72
CIITA-201ENST00000324288 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.54□□□□□ -0.72
CIITA-201ENST00000324288 CDK11BP21127 795 aaKnown RBP10.54□□□□□ -0.72
CIITA-201ENST00000324288 HIRIP3Q9BW71 556 aaPredicted RBP10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms