Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC21.15■□□□□ 0.98
SIX4Q9UIU6 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC21.15■□□□□ 0.98
SIX4Q9UIU6 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
SIX4Q9UIU6 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
SIX4Q9UIU6 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
SIX4Q9UIU6 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.98
SIX4Q9UIU6 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
SIX4Q9UIU6 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.98
SIX4Q9UIU6 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
SIX4Q9UIU6 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
SIX4Q9UIU6 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
SIX4Q9UIU6 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
SIX4Q9UIU6 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
SIX4Q9UIU6 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
SIX4Q9UIU6 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
SIX4Q9UIU6 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
SIX4Q9UIU6 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
SIX4Q9UIU6 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SIX4Q9UIU6 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
SIX4Q9UIU6 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SIX4Q9UIU6 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
SIX4Q9UIU6 KRT18P16-201ENST00000510337 1294 ntBASIC21.14■□□□□ 0.97
SIX4Q9UIU6 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC21.14■□□□□ 0.97
SIX4Q9UIU6 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
SIX4Q9UIU6 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SIX4Q9UIU6 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC21.14■□□□□ 0.97
SIX4Q9UIU6 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SIX4Q9UIU6 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
SIX4Q9UIU6 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
SIX4Q9UIU6 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SIX4Q9UIU6 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
SIX4Q9UIU6 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SIX4Q9UIU6 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC21.13■□□□□ 0.97
SIX4Q9UIU6 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SIX4Q9UIU6 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
SIX4Q9UIU6 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SIX4Q9UIU6 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
SIX4Q9UIU6 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC21.13■□□□□ 0.97
SIX4Q9UIU6 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SIX4Q9UIU6 AC008550.1-201ENST00000511500 884 ntBASIC21.13■□□□□ 0.97
SIX4Q9UIU6 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC21.13■□□□□ 0.97
SIX4Q9UIU6 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SIX4Q9UIU6 Z99916.2-201ENST00000604037 246 ntBASIC21.13■□□□□ 0.97
SIX4Q9UIU6 CABP2-204ENST00000636477 941 ntTSL 5 BASIC21.13■□□□□ 0.97
SIX4Q9UIU6 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC21.13■□□□□ 0.97
SIX4Q9UIU6 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC21.13■□□□□ 0.97
SIX4Q9UIU6 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC21.13■□□□□ 0.97
SIX4Q9UIU6 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SIX4Q9UIU6 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC21.13■□□□□ 0.97
SIX4Q9UIU6 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC21.13■□□□□ 0.97
SIX4Q9UIU6 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SIX4Q9UIU6 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SIX4Q9UIU6 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC21.12■□□□□ 0.97
SIX4Q9UIU6 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SIX4Q9UIU6 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
SIX4Q9UIU6 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
SIX4Q9UIU6 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SIX4Q9UIU6 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
SIX4Q9UIU6 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC21.12■□□□□ 0.97
SIX4Q9UIU6 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC21.12■□□□□ 0.97
SIX4Q9UIU6 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
SIX4Q9UIU6 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SIX4Q9UIU6 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SIX4Q9UIU6 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SIX4Q9UIU6 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
SIX4Q9UIU6 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC21.12■□□□□ 0.97
SIX4Q9UIU6 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC21.12■□□□□ 0.97
SIX4Q9UIU6 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
SIX4Q9UIU6 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
SIX4Q9UIU6 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC21.12■□□□□ 0.97
SIX4Q9UIU6 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SIX4Q9UIU6 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
SIX4Q9UIU6 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SIX4Q9UIU6 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC21.11■□□□□ 0.97
SIX4Q9UIU6 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC21.11■□□□□ 0.97
SIX4Q9UIU6 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SIX4Q9UIU6 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
SIX4Q9UIU6 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
SIX4Q9UIU6 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC21.11■□□□□ 0.97
SIX4Q9UIU6 AC093827.2-201ENST00000512654 315 ntBASIC21.11■□□□□ 0.97
SIX4Q9UIU6 AC004264.1-201ENST00000608354 794 ntBASIC21.11■□□□□ 0.97
SIX4Q9UIU6 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
SIX4Q9UIU6 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
SIX4Q9UIU6 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC21.11■□□□□ 0.97
SIX4Q9UIU6 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SIX4Q9UIU6 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC21.11■□□□□ 0.97
SIX4Q9UIU6 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SIX4Q9UIU6 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SIX4Q9UIU6 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
SIX4Q9UIU6 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SIX4Q9UIU6 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SIX4Q9UIU6 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC21.1■□□□□ 0.97
SIX4Q9UIU6 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC21.1■□□□□ 0.97
SIX4Q9UIU6 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC21.1■□□□□ 0.97
SIX4Q9UIU6 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC21.1■□□□□ 0.97
SIX4Q9UIU6 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
SIX4Q9UIU6 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
SIX4Q9UIU6 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC21.1■□□□□ 0.97
SIX4Q9UIU6 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SIX4Q9UIU6 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 13.1 ms