Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
DKK3Q9UBP4 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
DKK3Q9UBP4 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC19.8■□□□□ 0.76
DKK3Q9UBP4 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
DKK3Q9UBP4 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
DKK3Q9UBP4 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
DKK3Q9UBP4 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
DKK3Q9UBP4 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
DKK3Q9UBP4 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
DKK3Q9UBP4 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC19.8■□□□□ 0.76
DKK3Q9UBP4 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC19.8■□□□□ 0.76
DKK3Q9UBP4 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC19.8■□□□□ 0.76
DKK3Q9UBP4 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC19.8■□□□□ 0.76
DKK3Q9UBP4 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC19.8■□□□□ 0.76
DKK3Q9UBP4 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC19.8■□□□□ 0.76
DKK3Q9UBP4 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
DKK3Q9UBP4 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC19.8■□□□□ 0.76
DKK3Q9UBP4 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
DKK3Q9UBP4 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC19.8■□□□□ 0.76
DKK3Q9UBP4 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
DKK3Q9UBP4 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
DKK3Q9UBP4 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
DKK3Q9UBP4 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
DKK3Q9UBP4 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.8■□□□□ 0.76
DKK3Q9UBP4 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
DKK3Q9UBP4 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
DKK3Q9UBP4 HTR7P1-201ENST00000538670 1336 ntBASIC19.79■□□□□ 0.76
DKK3Q9UBP4 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
DKK3Q9UBP4 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
DKK3Q9UBP4 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
DKK3Q9UBP4 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC19.79■□□□□ 0.76
DKK3Q9UBP4 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
DKK3Q9UBP4 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
DKK3Q9UBP4 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
DKK3Q9UBP4 MDFI-202ENST00000373050 809 ntTSL 2 BASIC19.79■□□□□ 0.76
DKK3Q9UBP4 KRT18P16-201ENST00000510337 1294 ntBASIC19.79■□□□□ 0.76
DKK3Q9UBP4 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
DKK3Q9UBP4 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC19.79■□□□□ 0.76
DKK3Q9UBP4 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC19.79■□□□□ 0.76
DKK3Q9UBP4 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC19.79■□□□□ 0.76
DKK3Q9UBP4 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC19.79■□□□□ 0.76
DKK3Q9UBP4 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
DKK3Q9UBP4 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
DKK3Q9UBP4 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC19.79■□□□□ 0.76
DKK3Q9UBP4 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
DKK3Q9UBP4 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.79■□□□□ 0.76
DKK3Q9UBP4 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
DKK3Q9UBP4 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC19.78■□□□□ 0.76
DKK3Q9UBP4 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC19.78■□□□□ 0.76
DKK3Q9UBP4 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
DKK3Q9UBP4 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
DKK3Q9UBP4 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
DKK3Q9UBP4 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
DKK3Q9UBP4 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
DKK3Q9UBP4 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
DKK3Q9UBP4 AL596275.1-201ENST00000423464 877 ntBASIC19.78■□□□□ 0.76
DKK3Q9UBP4 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC19.78■□□□□ 0.76
DKK3Q9UBP4 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
DKK3Q9UBP4 AL353708.3-201ENST00000610272 989 ntBASIC19.78■□□□□ 0.76
DKK3Q9UBP4 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC19.78■□□□□ 0.76
DKK3Q9UBP4 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC19.78■□□□□ 0.76
DKK3Q9UBP4 AL049637.2-201ENST00000641778 930 ntBASIC19.78■□□□□ 0.76
DKK3Q9UBP4 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
DKK3Q9UBP4 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
DKK3Q9UBP4 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
DKK3Q9UBP4 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
DKK3Q9UBP4 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
DKK3Q9UBP4 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
DKK3Q9UBP4 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
DKK3Q9UBP4 GOLGA6L3-201ENST00000507199 1679 ntBASIC19.78■□□□□ 0.76
DKK3Q9UBP4 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC19.78■□□□□ 0.76
DKK3Q9UBP4 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC19.77■□□□□ 0.76
DKK3Q9UBP4 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
DKK3Q9UBP4 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC19.77■□□□□ 0.76
DKK3Q9UBP4 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
DKK3Q9UBP4 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
DKK3Q9UBP4 LINC01006-201ENST00000333319 2292 ntBASIC19.77■□□□□ 0.76
DKK3Q9UBP4 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
DKK3Q9UBP4 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
DKK3Q9UBP4 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
DKK3Q9UBP4 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
DKK3Q9UBP4 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
DKK3Q9UBP4 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
DKK3Q9UBP4 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
DKK3Q9UBP4 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC19.77■□□□□ 0.76
DKK3Q9UBP4 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC19.77■□□□□ 0.76
DKK3Q9UBP4 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC19.77■□□□□ 0.76
DKK3Q9UBP4 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC19.77■□□□□ 0.76
DKK3Q9UBP4 AF186192.3-201ENST00000583427 947 ntBASIC19.77■□□□□ 0.76
DKK3Q9UBP4 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.77■□□□□ 0.76
DKK3Q9UBP4 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC19.77■□□□□ 0.76
DKK3Q9UBP4 AC009237.14-201ENST00000609975 1594 ntBASIC19.77■□□□□ 0.76
DKK3Q9UBP4 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
DKK3Q9UBP4 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
DKK3Q9UBP4 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
DKK3Q9UBP4 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.75
DKK3Q9UBP4 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
DKK3Q9UBP4 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC19.77■□□□□ 0.75
DKK3Q9UBP4 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
DKK3Q9UBP4 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms