Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
CUEDC1Q9NWM3 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
CUEDC1Q9NWM3 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC19.08■□□□□ 0.64
CUEDC1Q9NWM3 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
CUEDC1Q9NWM3 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CUEDC1Q9NWM3 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CUEDC1Q9NWM3 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC19.07■□□□□ 0.64
CUEDC1Q9NWM3 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CUEDC1Q9NWM3 CALM3-202ENST00000391918 702 ntTSL 2 BASIC19.07■□□□□ 0.64
CUEDC1Q9NWM3 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CUEDC1Q9NWM3 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
CUEDC1Q9NWM3 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC19.07■□□□□ 0.64
CUEDC1Q9NWM3 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CUEDC1Q9NWM3 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CUEDC1Q9NWM3 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC19.07■□□□□ 0.64
CUEDC1Q9NWM3 AC018553.1-201ENST00000616682 1458 ntBASIC19.07■□□□□ 0.64
CUEDC1Q9NWM3 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC19.07■□□□□ 0.64
CUEDC1Q9NWM3 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC19.07■□□□□ 0.64
CUEDC1Q9NWM3 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CUEDC1Q9NWM3 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CUEDC1Q9NWM3 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CUEDC1Q9NWM3 GOLGA2P11-201ENST00000562660 1621 ntBASIC19.07■□□□□ 0.64
CUEDC1Q9NWM3 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC19.07■□□□□ 0.64
CUEDC1Q9NWM3 AFG3L1P-217ENST00000557444 2447 ntBASIC19.06■□□□□ 0.64
CUEDC1Q9NWM3 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
CUEDC1Q9NWM3 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CUEDC1Q9NWM3 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC19.06■□□□□ 0.64
CUEDC1Q9NWM3 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CUEDC1Q9NWM3 UBE2SP1-201ENST00000450587 669 ntBASIC19.06■□□□□ 0.64
CUEDC1Q9NWM3 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC19.06■□□□□ 0.64
CUEDC1Q9NWM3 THEM4-205ENST00000489410 643 ntTSL 2 BASIC19.06■□□□□ 0.64
CUEDC1Q9NWM3 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC19.06■□□□□ 0.64
CUEDC1Q9NWM3 AC008550.1-201ENST00000511500 884 ntBASIC19.06■□□□□ 0.64
CUEDC1Q9NWM3 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
CUEDC1Q9NWM3 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CUEDC1Q9NWM3 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CUEDC1Q9NWM3 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CUEDC1Q9NWM3 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CUEDC1Q9NWM3 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
CUEDC1Q9NWM3 AC116351.2-201ENST00000606540 1585 ntBASIC19.06■□□□□ 0.64
CUEDC1Q9NWM3 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
CUEDC1Q9NWM3 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.05■□□□□ 0.64
CUEDC1Q9NWM3 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
CUEDC1Q9NWM3 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC19.05■□□□□ 0.64
CUEDC1Q9NWM3 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CUEDC1Q9NWM3 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
CUEDC1Q9NWM3 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CUEDC1Q9NWM3 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CUEDC1Q9NWM3 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CUEDC1Q9NWM3 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC19.05■□□□□ 0.64
CUEDC1Q9NWM3 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CUEDC1Q9NWM3 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CUEDC1Q9NWM3 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CUEDC1Q9NWM3 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
CUEDC1Q9NWM3 MIR718-201ENST00000390190 70 ntBASIC19.05■□□□□ 0.64
CUEDC1Q9NWM3 MIR1224-201ENST00000408193 85 ntBASIC19.05■□□□□ 0.64
CUEDC1Q9NWM3 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC19.05■□□□□ 0.64
CUEDC1Q9NWM3 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC19.05■□□□□ 0.64
CUEDC1Q9NWM3 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC19.05■□□□□ 0.64
CUEDC1Q9NWM3 USP36-216ENST00000589424 970 ntTSL 5 BASIC19.05■□□□□ 0.64
CUEDC1Q9NWM3 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
CUEDC1Q9NWM3 AC069544.1-201ENST00000609399 999 ntBASIC19.05■□□□□ 0.64
CUEDC1Q9NWM3 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CUEDC1Q9NWM3 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CUEDC1Q9NWM3 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CUEDC1Q9NWM3 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CUEDC1Q9NWM3 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
CUEDC1Q9NWM3 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC19.04■□□□□ 0.64
CUEDC1Q9NWM3 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CUEDC1Q9NWM3 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CUEDC1Q9NWM3 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
CUEDC1Q9NWM3 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC19.04■□□□□ 0.64
CUEDC1Q9NWM3 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CUEDC1Q9NWM3 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC19.04■□□□□ 0.64
CUEDC1Q9NWM3 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC19.04■□□□□ 0.64
CUEDC1Q9NWM3 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CUEDC1Q9NWM3 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CUEDC1Q9NWM3 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CUEDC1Q9NWM3 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CUEDC1Q9NWM3 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CUEDC1Q9NWM3 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC19.04■□□□□ 0.64
CUEDC1Q9NWM3 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CUEDC1Q9NWM3 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CUEDC1Q9NWM3 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CUEDC1Q9NWM3 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC19.04■□□□□ 0.64
CUEDC1Q9NWM3 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC19.04■□□□□ 0.64
CUEDC1Q9NWM3 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
CUEDC1Q9NWM3 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CUEDC1Q9NWM3 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
CUEDC1Q9NWM3 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC19.04■□□□□ 0.64
CUEDC1Q9NWM3 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CUEDC1Q9NWM3 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC19.03■□□□□ 0.64
CUEDC1Q9NWM3 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
CUEDC1Q9NWM3 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CUEDC1Q9NWM3 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC19.03■□□□□ 0.64
CUEDC1Q9NWM3 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CUEDC1Q9NWM3 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CUEDC1Q9NWM3 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
CUEDC1Q9NWM3 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CUEDC1Q9NWM3 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC19.03■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms