Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
TM9SF3Q9HD45 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
TM9SF3Q9HD45 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC19.73■□□□□ 0.75
TM9SF3Q9HD45 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
TM9SF3Q9HD45 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TM9SF3Q9HD45 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
TM9SF3Q9HD45 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TM9SF3Q9HD45 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
TM9SF3Q9HD45 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC19.72■□□□□ 0.75
TM9SF3Q9HD45 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TM9SF3Q9HD45 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC19.72■□□□□ 0.75
TM9SF3Q9HD45 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TM9SF3Q9HD45 UNC93B2-201ENST00000285383 730 ntBASIC19.72■□□□□ 0.75
TM9SF3Q9HD45 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC19.72■□□□□ 0.75
TM9SF3Q9HD45 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
TM9SF3Q9HD45 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC19.72■□□□□ 0.75
TM9SF3Q9HD45 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
TM9SF3Q9HD45 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC19.72■□□□□ 0.75
TM9SF3Q9HD45 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC19.72■□□□□ 0.75
TM9SF3Q9HD45 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC19.72■□□□□ 0.75
TM9SF3Q9HD45 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
TM9SF3Q9HD45 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC19.72■□□□□ 0.75
TM9SF3Q9HD45 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
TM9SF3Q9HD45 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC19.72■□□□□ 0.75
TM9SF3Q9HD45 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TM9SF3Q9HD45 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC19.72■□□□□ 0.75
TM9SF3Q9HD45 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC19.72■□□□□ 0.75
TM9SF3Q9HD45 AC079598.2-202ENST00000546624 1451 ntBASIC19.72■□□□□ 0.75
TM9SF3Q9HD45 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TM9SF3Q9HD45 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
TM9SF3Q9HD45 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TM9SF3Q9HD45 RNF165-205ENST00000588679 2904 ntBASIC19.71■□□□□ 0.75
TM9SF3Q9HD45 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TM9SF3Q9HD45 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TM9SF3Q9HD45 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TM9SF3Q9HD45 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
TM9SF3Q9HD45 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC19.71■□□□□ 0.75
TM9SF3Q9HD45 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC19.71■□□□□ 0.75
TM9SF3Q9HD45 RN7SL850P-201ENST00000579959 291 ntBASIC19.71■□□□□ 0.75
TM9SF3Q9HD45 AP000525.1-201ENST00000608286 694 ntBASIC19.71■□□□□ 0.75
TM9SF3Q9HD45 MIR6786-201ENST00000616843 113 ntBASIC19.71■□□□□ 0.75
TM9SF3Q9HD45 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC19.71■□□□□ 0.75
TM9SF3Q9HD45 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TM9SF3Q9HD45 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
TM9SF3Q9HD45 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TM9SF3Q9HD45 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TM9SF3Q9HD45 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
TM9SF3Q9HD45 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
TM9SF3Q9HD45 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC19.71■□□□□ 0.75
TM9SF3Q9HD45 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TM9SF3Q9HD45 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TM9SF3Q9HD45 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC19.7■□□□□ 0.74
TM9SF3Q9HD45 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
TM9SF3Q9HD45 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TM9SF3Q9HD45 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TM9SF3Q9HD45 KRT8P9-201ENST00000558927 1449 ntBASIC19.7■□□□□ 0.74
TM9SF3Q9HD45 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TM9SF3Q9HD45 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TM9SF3Q9HD45 AC145285.6-201ENST00000604632 637 ntBASIC19.7■□□□□ 0.74
TM9SF3Q9HD45 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
TM9SF3Q9HD45 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC19.7■□□□□ 0.74
TM9SF3Q9HD45 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
TM9SF3Q9HD45 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TM9SF3Q9HD45 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
TM9SF3Q9HD45 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TM9SF3Q9HD45 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TM9SF3Q9HD45 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC19.69■□□□□ 0.74
TM9SF3Q9HD45 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
TM9SF3Q9HD45 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC19.69■□□□□ 0.74
TM9SF3Q9HD45 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TM9SF3Q9HD45 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC19.69■□□□□ 0.74
TM9SF3Q9HD45 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TM9SF3Q9HD45 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC19.69■□□□□ 0.74
TM9SF3Q9HD45 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC19.69■□□□□ 0.74
TM9SF3Q9HD45 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC19.69■□□□□ 0.74
TM9SF3Q9HD45 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC19.69■□□□□ 0.74
TM9SF3Q9HD45 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC19.69■□□□□ 0.74
TM9SF3Q9HD45 CR392000.1-201ENST00000624770 1228 ntBASIC19.69■□□□□ 0.74
TM9SF3Q9HD45 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC19.69■□□□□ 0.74
TM9SF3Q9HD45 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TM9SF3Q9HD45 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC19.69■□□□□ 0.74
TM9SF3Q9HD45 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TM9SF3Q9HD45 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TM9SF3Q9HD45 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TM9SF3Q9HD45 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
TM9SF3Q9HD45 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC19.68■□□□□ 0.74
TM9SF3Q9HD45 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
TM9SF3Q9HD45 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TM9SF3Q9HD45 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
TM9SF3Q9HD45 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TM9SF3Q9HD45 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC19.68■□□□□ 0.74
TM9SF3Q9HD45 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
TM9SF3Q9HD45 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TM9SF3Q9HD45 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.68■□□□□ 0.74
TM9SF3Q9HD45 CALM3-202ENST00000391918 702 ntTSL 2 BASIC19.68■□□□□ 0.74
TM9SF3Q9HD45 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC19.68■□□□□ 0.74
TM9SF3Q9HD45 MIR1238-201ENST00000408483 83 ntBASIC19.68■□□□□ 0.74
TM9SF3Q9HD45 NIFKP9-201ENST00000419265 221 ntBASIC19.68■□□□□ 0.74
TM9SF3Q9HD45 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.68■□□□□ 0.74
TM9SF3Q9HD45 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms