Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC20.35■□□□□ 0.85
PCDH9Q9HC56 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC20.35■□□□□ 0.85
PCDH9Q9HC56 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
PCDH9Q9HC56 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC20.35■□□□□ 0.85
PCDH9Q9HC56 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PCDH9Q9HC56 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
PCDH9Q9HC56 EMC9-206ENST00000560403 872 ntTSL 2 BASIC20.35■□□□□ 0.85
PCDH9Q9HC56 MYC-209ENST00000641252 345 ntBASIC20.35■□□□□ 0.85
PCDH9Q9HC56 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PCDH9Q9HC56 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PCDH9Q9HC56 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
PCDH9Q9HC56 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC20.35■□□□□ 0.85
PCDH9Q9HC56 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
PCDH9Q9HC56 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
PCDH9Q9HC56 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
PCDH9Q9HC56 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
PCDH9Q9HC56 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
PCDH9Q9HC56 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PCDH9Q9HC56 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
PCDH9Q9HC56 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PCDH9Q9HC56 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC20.35■□□□□ 0.85
PCDH9Q9HC56 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
PCDH9Q9HC56 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC20.35■□□□□ 0.85
PCDH9Q9HC56 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
PCDH9Q9HC56 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PCDH9Q9HC56 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PCDH9Q9HC56 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
PCDH9Q9HC56 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
PCDH9Q9HC56 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
PCDH9Q9HC56 RGMA-211ENST00000557420 989 ntTSL 3 BASIC20.34■□□□□ 0.85
PCDH9Q9HC56 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
PCDH9Q9HC56 Z82202.1-201ENST00000623446 1880 ntBASIC20.34■□□□□ 0.85
PCDH9Q9HC56 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PCDH9Q9HC56 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
PCDH9Q9HC56 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
PCDH9Q9HC56 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
PCDH9Q9HC56 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
PCDH9Q9HC56 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC20.33■□□□□ 0.85
PCDH9Q9HC56 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC20.33■□□□□ 0.85
PCDH9Q9HC56 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC20.33■□□□□ 0.85
PCDH9Q9HC56 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC20.33■□□□□ 0.85
PCDH9Q9HC56 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.84
PCDH9Q9HC56 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
PCDH9Q9HC56 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
PCDH9Q9HC56 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
PCDH9Q9HC56 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
PCDH9Q9HC56 AP000974.1-201ENST00000623909 2387 ntBASIC20.32■□□□□ 0.84
PCDH9Q9HC56 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
PCDH9Q9HC56 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PCDH9Q9HC56 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
PCDH9Q9HC56 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
PCDH9Q9HC56 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC20.32■□□□□ 0.84
PCDH9Q9HC56 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
PCDH9Q9HC56 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PCDH9Q9HC56 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
PCDH9Q9HC56 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PCDH9Q9HC56 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PCDH9Q9HC56 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PCDH9Q9HC56 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC20.32■□□□□ 0.84
PCDH9Q9HC56 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC20.32■□□□□ 0.84
PCDH9Q9HC56 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PCDH9Q9HC56 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC20.32■□□□□ 0.84
PCDH9Q9HC56 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PCDH9Q9HC56 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
PCDH9Q9HC56 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC20.32■□□□□ 0.84
PCDH9Q9HC56 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PCDH9Q9HC56 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PCDH9Q9HC56 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PCDH9Q9HC56 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PCDH9Q9HC56 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC20.32■□□□□ 0.84
PCDH9Q9HC56 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PCDH9Q9HC56 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
PCDH9Q9HC56 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PCDH9Q9HC56 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC20.31■□□□□ 0.84
PCDH9Q9HC56 PHGDH-210ENST00000641115 1638 ntBASIC20.31■□□□□ 0.84
PCDH9Q9HC56 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PCDH9Q9HC56 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
PCDH9Q9HC56 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PCDH9Q9HC56 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PCDH9Q9HC56 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PCDH9Q9HC56 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PCDH9Q9HC56 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
PCDH9Q9HC56 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PCDH9Q9HC56 TP73-202ENST00000354437 2140 ntTSL 5 BASIC20.31■□□□□ 0.84
PCDH9Q9HC56 MFF-205ENST00000354503 1085 ntTSL 2 BASIC20.31■□□□□ 0.84
PCDH9Q9HC56 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PCDH9Q9HC56 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PCDH9Q9HC56 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
PCDH9Q9HC56 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC20.31■□□□□ 0.84
PCDH9Q9HC56 AC023632.3-201ENST00000521633 145 ntBASIC20.31■□□□□ 0.84
PCDH9Q9HC56 AC083880.1-201ENST00000608266 535 ntBASIC20.31■□□□□ 0.84
PCDH9Q9HC56 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
PCDH9Q9HC56 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PCDH9Q9HC56 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
PCDH9Q9HC56 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PCDH9Q9HC56 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PCDH9Q9HC56 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
PCDH9Q9HC56 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PCDH9Q9HC56 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC20.3■□□□□ 0.84
PCDH9Q9HC56 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 69.6 ms