Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC21.62■■□□□ 1.05
TRAIPQ9BWF2 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
TRAIPQ9BWF2 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
TRAIPQ9BWF2 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC21.61■■□□□ 1.05
TRAIPQ9BWF2 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC21.61■■□□□ 1.05
TRAIPQ9BWF2 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
TRAIPQ9BWF2 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
TRAIPQ9BWF2 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
TRAIPQ9BWF2 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
TRAIPQ9BWF2 ECEL1P3-201ENST00000427961 737 ntBASIC21.61■■□□□ 1.05
TRAIPQ9BWF2 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC21.61■■□□□ 1.05
TRAIPQ9BWF2 TSPY15P-201ENST00000457163 923 ntBASIC21.61■■□□□ 1.05
TRAIPQ9BWF2 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC21.61■■□□□ 1.05
TRAIPQ9BWF2 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
TRAIPQ9BWF2 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC21.61■■□□□ 1.05
TRAIPQ9BWF2 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
TRAIPQ9BWF2 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
TRAIPQ9BWF2 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
TRAIPQ9BWF2 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
TRAIPQ9BWF2 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
TRAIPQ9BWF2 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
TRAIPQ9BWF2 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
TRAIPQ9BWF2 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC21.6■■□□□ 1.05
TRAIPQ9BWF2 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
TRAIPQ9BWF2 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
TRAIPQ9BWF2 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
TRAIPQ9BWF2 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC21.6■■□□□ 1.05
TRAIPQ9BWF2 AP003071.4-201ENST00000562276 1284 ntBASIC21.6■■□□□ 1.05
TRAIPQ9BWF2 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC21.6■■□□□ 1.05
TRAIPQ9BWF2 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC21.6■■□□□ 1.05
TRAIPQ9BWF2 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
TRAIPQ9BWF2 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
TRAIPQ9BWF2 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
TRAIPQ9BWF2 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
TRAIPQ9BWF2 DPP3P2-201ENST00000416030 1696 ntBASIC21.6■■□□□ 1.05
TRAIPQ9BWF2 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
TRAIPQ9BWF2 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
TRAIPQ9BWF2 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
TRAIPQ9BWF2 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
TRAIPQ9BWF2 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC21.59■■□□□ 1.05
TRAIPQ9BWF2 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
TRAIPQ9BWF2 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
TRAIPQ9BWF2 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
TRAIPQ9BWF2 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC21.59■■□□□ 1.05
TRAIPQ9BWF2 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
TRAIPQ9BWF2 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
TRAIPQ9BWF2 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC21.59■■□□□ 1.05
TRAIPQ9BWF2 AC012306.2-201ENST00000609350 630 ntBASIC21.59■■□□□ 1.05
TRAIPQ9BWF2 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
TRAIPQ9BWF2 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
TRAIPQ9BWF2 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC21.59■■□□□ 1.05
TRAIPQ9BWF2 ME2-216ENST00000639850 2331 ntTSL 5 BASIC21.58■■□□□ 1.05
TRAIPQ9BWF2 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
TRAIPQ9BWF2 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
TRAIPQ9BWF2 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
TRAIPQ9BWF2 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
TRAIPQ9BWF2 AC116351.2-201ENST00000606540 1585 ntBASIC21.58■■□□□ 1.05
TRAIPQ9BWF2 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
TRAIPQ9BWF2 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
TRAIPQ9BWF2 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC21.58■■□□□ 1.05
TRAIPQ9BWF2 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
TRAIPQ9BWF2 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC21.58■■□□□ 1.05
TRAIPQ9BWF2 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
TRAIPQ9BWF2 AL355355.2-201ENST00000442321 338 ntBASIC21.58■■□□□ 1.05
TRAIPQ9BWF2 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC21.58■■□□□ 1.05
TRAIPQ9BWF2 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC21.58■■□□□ 1.05
TRAIPQ9BWF2 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC21.58■■□□□ 1.05
TRAIPQ9BWF2 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC21.58■■□□□ 1.05
TRAIPQ9BWF2 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC21.58■■□□□ 1.05
TRAIPQ9BWF2 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC21.58■■□□□ 1.05
TRAIPQ9BWF2 AC097493.4-201ENST00000641197 219 ntBASIC21.58■■□□□ 1.05
TRAIPQ9BWF2 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
TRAIPQ9BWF2 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
TRAIPQ9BWF2 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.04
TRAIPQ9BWF2 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC21.58■■□□□ 1.04
TRAIPQ9BWF2 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC21.58■■□□□ 1.04
TRAIPQ9BWF2 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
TRAIPQ9BWF2 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
TRAIPQ9BWF2 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
TRAIPQ9BWF2 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.04
TRAIPQ9BWF2 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC21.57■■□□□ 1.04
TRAIPQ9BWF2 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
TRAIPQ9BWF2 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
TRAIPQ9BWF2 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC21.57■■□□□ 1.04
TRAIPQ9BWF2 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
TRAIPQ9BWF2 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
TRAIPQ9BWF2 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
TRAIPQ9BWF2 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
TRAIPQ9BWF2 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
TRAIPQ9BWF2 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
TRAIPQ9BWF2 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
TRAIPQ9BWF2 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC21.57■■□□□ 1.04
TRAIPQ9BWF2 AC087499.1-201ENST00000418141 1075 ntBASIC21.57■■□□□ 1.04
TRAIPQ9BWF2 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC21.57■■□□□ 1.04
TRAIPQ9BWF2 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
TRAIPQ9BWF2 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC21.57■■□□□ 1.04
TRAIPQ9BWF2 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC21.57■■□□□ 1.04
TRAIPQ9BWF2 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC21.57■■□□□ 1.04
TRAIPQ9BWF2 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
TRAIPQ9BWF2 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms