Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC18.09■□□□□ 0.49
TIMP4Q99727 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC18.09■□□□□ 0.49
TIMP4Q99727 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC18.09■□□□□ 0.49
TIMP4Q99727 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TIMP4Q99727 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC18.09■□□□□ 0.49
TIMP4Q99727 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC18.09■□□□□ 0.49
TIMP4Q99727 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC18.09■□□□□ 0.49
TIMP4Q99727 MTDHP1-201ENST00000605323 784 ntBASIC18.09■□□□□ 0.49
TIMP4Q99727 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TIMP4Q99727 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC18.09■□□□□ 0.49
TIMP4Q99727 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
TIMP4Q99727 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
TIMP4Q99727 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
TIMP4Q99727 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
TIMP4Q99727 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC18.08■□□□□ 0.49
TIMP4Q99727 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.08■□□□□ 0.49
TIMP4Q99727 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
TIMP4Q99727 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
TIMP4Q99727 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
TIMP4Q99727 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TIMP4Q99727 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC18.08■□□□□ 0.48
TIMP4Q99727 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC18.08■□□□□ 0.48
TIMP4Q99727 HES2-206ENST00000489730 730 ntTSL 2 BASIC18.08■□□□□ 0.48
TIMP4Q99727 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
TIMP4Q99727 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC18.08■□□□□ 0.48
TIMP4Q99727 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC18.08■□□□□ 0.48
TIMP4Q99727 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC18.08■□□□□ 0.48
TIMP4Q99727 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TIMP4Q99727 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
TIMP4Q99727 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC18.08■□□□□ 0.48
TIMP4Q99727 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
TIMP4Q99727 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
TIMP4Q99727 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC18.08■□□□□ 0.48
TIMP4Q99727 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC18.08■□□□□ 0.48
TIMP4Q99727 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC18.08■□□□□ 0.48
TIMP4Q99727 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC18.08■□□□□ 0.48
TIMP4Q99727 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TIMP4Q99727 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TIMP4Q99727 AL020996.1-203ENST00000536896 2307 ntBASIC18.07■□□□□ 0.48
TIMP4Q99727 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TIMP4Q99727 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
TIMP4Q99727 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TIMP4Q99727 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC18.07■□□□□ 0.48
TIMP4Q99727 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC18.07■□□□□ 0.48
TIMP4Q99727 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC18.07■□□□□ 0.48
TIMP4Q99727 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
TIMP4Q99727 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TIMP4Q99727 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TIMP4Q99727 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
TIMP4Q99727 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
TIMP4Q99727 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC18.07■□□□□ 0.48
TIMP4Q99727 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TIMP4Q99727 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TIMP4Q99727 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC18.07■□□□□ 0.48
TIMP4Q99727 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC18.07■□□□□ 0.48
TIMP4Q99727 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC18.07■□□□□ 0.48
TIMP4Q99727 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC18.07■□□□□ 0.48
TIMP4Q99727 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC18.07■□□□□ 0.48
TIMP4Q99727 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
TIMP4Q99727 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC18.07■□□□□ 0.48
TIMP4Q99727 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TIMP4Q99727 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC18.07■□□□□ 0.48
TIMP4Q99727 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TIMP4Q99727 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TIMP4Q99727 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
TIMP4Q99727 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
TIMP4Q99727 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC18.06■□□□□ 0.48
TIMP4Q99727 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TIMP4Q99727 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TIMP4Q99727 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC18.06■□□□□ 0.48
TIMP4Q99727 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TIMP4Q99727 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TIMP4Q99727 MME-217ENST00000616757 1315 ntTSL 5 BASIC18.06■□□□□ 0.48
TIMP4Q99727 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
TIMP4Q99727 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
TIMP4Q99727 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC18.06■□□□□ 0.48
TIMP4Q99727 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC18.06■□□□□ 0.48
TIMP4Q99727 ISG20-202ENST00000379224 540 ntTSL 3 BASIC18.06■□□□□ 0.48
TIMP4Q99727 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC18.06■□□□□ 0.48
TIMP4Q99727 RPS2P4-201ENST00000476944 856 ntBASIC18.06■□□□□ 0.48
TIMP4Q99727 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC18.06■□□□□ 0.48
TIMP4Q99727 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC18.06■□□□□ 0.48
TIMP4Q99727 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
TIMP4Q99727 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TIMP4Q99727 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC18.06■□□□□ 0.48
TIMP4Q99727 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC18.06■□□□□ 0.48
TIMP4Q99727 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
TIMP4Q99727 USP36-216ENST00000589424 970 ntTSL 5 BASIC18.06■□□□□ 0.48
TIMP4Q99727 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
TIMP4Q99727 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
TIMP4Q99727 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC18.06■□□□□ 0.48
TIMP4Q99727 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TIMP4Q99727 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TIMP4Q99727 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
TIMP4Q99727 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TIMP4Q99727 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC18.06■□□□□ 0.48
TIMP4Q99727 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TIMP4Q99727 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TIMP4Q99727 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
TIMP4Q99727 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms