Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC19.61■□□□□ 0.73
VPS13AQ96RL7 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC19.61■□□□□ 0.73
VPS13AQ96RL7 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VPS13AQ96RL7 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS13AQ96RL7 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VPS13AQ96RL7 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS13AQ96RL7 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC19.61■□□□□ 0.73
VPS13AQ96RL7 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS13AQ96RL7 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS13AQ96RL7 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VPS13AQ96RL7 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS13AQ96RL7 AC008040.2-201ENST00000461049 708 ntBASIC19.61■□□□□ 0.73
VPS13AQ96RL7 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC19.61■□□□□ 0.73
VPS13AQ96RL7 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC19.61■□□□□ 0.73
VPS13AQ96RL7 CYGB-204ENST00000589342 815 ntTSL 3 BASIC19.61■□□□□ 0.73
VPS13AQ96RL7 AL732292.2-201ENST00000609649 430 ntBASIC19.61■□□□□ 0.73
VPS13AQ96RL7 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS13AQ96RL7 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS13AQ96RL7 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC19.61■□□□□ 0.73
VPS13AQ96RL7 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS13AQ96RL7 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VPS13AQ96RL7 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS13AQ96RL7 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
VPS13AQ96RL7 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS13AQ96RL7 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC19.6■□□□□ 0.73
VPS13AQ96RL7 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC19.6■□□□□ 0.73
VPS13AQ96RL7 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC19.6■□□□□ 0.73
VPS13AQ96RL7 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC19.6■□□□□ 0.73
VPS13AQ96RL7 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC19.6■□□□□ 0.73
VPS13AQ96RL7 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC19.6■□□□□ 0.73
VPS13AQ96RL7 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
VPS13AQ96RL7 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS13AQ96RL7 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS13AQ96RL7 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC19.6■□□□□ 0.73
VPS13AQ96RL7 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
VPS13AQ96RL7 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
VPS13AQ96RL7 ATP5G2P1-201ENST00000433580 426 ntBASIC19.6■□□□□ 0.73
VPS13AQ96RL7 AP000692.2-201ENST00000608391 879 ntBASIC19.6■□□□□ 0.73
VPS13AQ96RL7 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS13AQ96RL7 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC19.6■□□□□ 0.73
VPS13AQ96RL7 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
VPS13AQ96RL7 SPDYE13P-201ENST00000445314 798 ntBASIC19.6■□□□□ 0.73
VPS13AQ96RL7 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC19.6■□□□□ 0.73
VPS13AQ96RL7 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC19.59■□□□□ 0.73
VPS13AQ96RL7 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS13AQ96RL7 GXYLT1P6-201ENST00000456472 1187 ntBASIC19.59■□□□□ 0.73
VPS13AQ96RL7 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VPS13AQ96RL7 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
VPS13AQ96RL7 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC19.59■□□□□ 0.73
VPS13AQ96RL7 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VPS13AQ96RL7 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS13AQ96RL7 EMBP1-201ENST00000458200 901 ntBASIC19.59■□□□□ 0.73
VPS13AQ96RL7 SNX5-210ENST00000481323 562 ntTSL 3 BASIC19.59■□□□□ 0.73
VPS13AQ96RL7 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC19.59■□□□□ 0.73
VPS13AQ96RL7 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC19.59■□□□□ 0.73
VPS13AQ96RL7 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC19.59■□□□□ 0.73
VPS13AQ96RL7 LINC01465-201ENST00000408887 1940 ntBASIC19.59■□□□□ 0.73
VPS13AQ96RL7 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
VPS13AQ96RL7 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS13AQ96RL7 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
VPS13AQ96RL7 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
VPS13AQ96RL7 HMGN1P19-201ENST00000436976 333 ntBASIC19.58■□□□□ 0.73
VPS13AQ96RL7 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC19.58■□□□□ 0.73
VPS13AQ96RL7 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
VPS13AQ96RL7 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
VPS13AQ96RL7 AC010653.2-201ENST00000623505 997 ntBASIC19.58■□□□□ 0.73
VPS13AQ96RL7 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
VPS13AQ96RL7 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.73
VPS13AQ96RL7 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
VPS13AQ96RL7 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC19.58■□□□□ 0.73
VPS13AQ96RL7 KRT18P38-201ENST00000449496 1282 ntBASIC19.58■□□□□ 0.73
VPS13AQ96RL7 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC19.58■□□□□ 0.73
VPS13AQ96RL7 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
VPS13AQ96RL7 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC19.58■□□□□ 0.73
VPS13AQ96RL7 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC19.58■□□□□ 0.73
VPS13AQ96RL7 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS13AQ96RL7 GALC-202ENST00000393568 2054 ntTSL 2 BASIC19.58■□□□□ 0.72
VPS13AQ96RL7 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC19.58■□□□□ 0.72
VPS13AQ96RL7 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC19.58■□□□□ 0.72
VPS13AQ96RL7 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC19.58■□□□□ 0.72
VPS13AQ96RL7 AC116562.4-202ENST00000641738 218 ntBASIC19.58■□□□□ 0.72
VPS13AQ96RL7 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS13AQ96RL7 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS13AQ96RL7 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC19.57■□□□□ 0.72
VPS13AQ96RL7 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VPS13AQ96RL7 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
VPS13AQ96RL7 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC19.57■□□□□ 0.72
VPS13AQ96RL7 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS13AQ96RL7 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC19.57■□□□□ 0.72
VPS13AQ96RL7 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VPS13AQ96RL7 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
VPS13AQ96RL7 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC19.56■□□□□ 0.72
VPS13AQ96RL7 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC19.56■□□□□ 0.72
VPS13AQ96RL7 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC19.56■□□□□ 0.72
VPS13AQ96RL7 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS13AQ96RL7 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
VPS13AQ96RL7 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
VPS13AQ96RL7 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
VPS13AQ96RL7 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS13AQ96RL7 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC19.56■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms