Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
HDDC3Q8N4P3 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HDDC3Q8N4P3 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC19.81■□□□□ 0.76
HDDC3Q8N4P3 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC19.81■□□□□ 0.76
HDDC3Q8N4P3 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HDDC3Q8N4P3 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC19.81■□□□□ 0.76
HDDC3Q8N4P3 UNC93B2-201ENST00000285383 730 ntBASIC19.81■□□□□ 0.76
HDDC3Q8N4P3 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HDDC3Q8N4P3 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC19.81■□□□□ 0.76
HDDC3Q8N4P3 NIFKP9-201ENST00000419265 221 ntBASIC19.81■□□□□ 0.76
HDDC3Q8N4P3 KSR1P1-201ENST00000446298 240 ntBASIC19.81■□□□□ 0.76
HDDC3Q8N4P3 RNF146-204ENST00000476956 884 ntTSL 2 BASIC19.81■□□□□ 0.76
HDDC3Q8N4P3 NUDT16P1-203ENST00000513809 620 ntBASIC19.81■□□□□ 0.76
HDDC3Q8N4P3 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC19.81■□□□□ 0.76
HDDC3Q8N4P3 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HDDC3Q8N4P3 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HDDC3Q8N4P3 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HDDC3Q8N4P3 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HDDC3Q8N4P3 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
HDDC3Q8N4P3 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HDDC3Q8N4P3 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
HDDC3Q8N4P3 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC19.8■□□□□ 0.76
HDDC3Q8N4P3 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC19.8■□□□□ 0.76
HDDC3Q8N4P3 PHGDH-210ENST00000641115 1638 ntBASIC19.8■□□□□ 0.76
HDDC3Q8N4P3 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
HDDC3Q8N4P3 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HDDC3Q8N4P3 AC005521.1-201ENST00000393351 872 ntBASIC19.8■□□□□ 0.76
HDDC3Q8N4P3 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC19.8■□□□□ 0.76
HDDC3Q8N4P3 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC19.8■□□□□ 0.76
HDDC3Q8N4P3 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC19.8■□□□□ 0.76
HDDC3Q8N4P3 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
HDDC3Q8N4P3 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HDDC3Q8N4P3 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC19.8■□□□□ 0.76
HDDC3Q8N4P3 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
HDDC3Q8N4P3 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HDDC3Q8N4P3 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC19.8■□□□□ 0.76
HDDC3Q8N4P3 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
HDDC3Q8N4P3 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC19.79■□□□□ 0.76
HDDC3Q8N4P3 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
HDDC3Q8N4P3 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
HDDC3Q8N4P3 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC19.79■□□□□ 0.76
HDDC3Q8N4P3 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC19.79■□□□□ 0.76
HDDC3Q8N4P3 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HDDC3Q8N4P3 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HDDC3Q8N4P3 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
HDDC3Q8N4P3 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
HDDC3Q8N4P3 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
HDDC3Q8N4P3 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HDDC3Q8N4P3 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HDDC3Q8N4P3 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC19.79■□□□□ 0.76
HDDC3Q8N4P3 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
HDDC3Q8N4P3 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC19.79■□□□□ 0.76
HDDC3Q8N4P3 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
HDDC3Q8N4P3 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
HDDC3Q8N4P3 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC19.79■□□□□ 0.76
HDDC3Q8N4P3 P4HB-223ENST00000576390 439 ntTSL 4 BASIC19.79■□□□□ 0.76
HDDC3Q8N4P3 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC19.79■□□□□ 0.76
HDDC3Q8N4P3 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HDDC3Q8N4P3 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
HDDC3Q8N4P3 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC19.79■□□□□ 0.76
HDDC3Q8N4P3 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
HDDC3Q8N4P3 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
HDDC3Q8N4P3 KRT16P1-201ENST00000399124 1418 ntBASIC19.78■□□□□ 0.76
HDDC3Q8N4P3 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HDDC3Q8N4P3 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HDDC3Q8N4P3 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HDDC3Q8N4P3 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HDDC3Q8N4P3 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC19.78■□□□□ 0.76
HDDC3Q8N4P3 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC19.78■□□□□ 0.76
HDDC3Q8N4P3 YBX1P10-201ENST00000444752 975 ntBASIC19.78■□□□□ 0.76
HDDC3Q8N4P3 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC19.78■□□□□ 0.76
HDDC3Q8N4P3 RBM17P1-201ENST00000453646 1190 ntBASIC19.78■□□□□ 0.76
HDDC3Q8N4P3 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC19.78■□□□□ 0.76
HDDC3Q8N4P3 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC19.78■□□□□ 0.76
HDDC3Q8N4P3 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC19.78■□□□□ 0.76
HDDC3Q8N4P3 REXO1L10P-201ENST00000615707 1290 ntBASIC19.78■□□□□ 0.76
HDDC3Q8N4P3 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
HDDC3Q8N4P3 GLDC-219ENST00000640208 420 ntTSL 2 BASIC19.78■□□□□ 0.76
HDDC3Q8N4P3 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HDDC3Q8N4P3 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HDDC3Q8N4P3 LINC01568-207ENST00000641790 1380 ntBASIC19.78■□□□□ 0.76
HDDC3Q8N4P3 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HDDC3Q8N4P3 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
HDDC3Q8N4P3 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HDDC3Q8N4P3 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC19.77■□□□□ 0.76
HDDC3Q8N4P3 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC19.77■□□□□ 0.76
HDDC3Q8N4P3 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
HDDC3Q8N4P3 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.76
HDDC3Q8N4P3 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
HDDC3Q8N4P3 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
HDDC3Q8N4P3 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
HDDC3Q8N4P3 CRAT-202ENST00000393384 973 ntTSL 2 BASIC19.77■□□□□ 0.76
HDDC3Q8N4P3 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC19.77■□□□□ 0.76
HDDC3Q8N4P3 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC19.77■□□□□ 0.76
HDDC3Q8N4P3 NME3-204ENST00000563498 920 ntTSL 2 BASIC19.77■□□□□ 0.76
HDDC3Q8N4P3 C1QL1P1-201ENST00000568105 661 ntBASIC19.77■□□□□ 0.76
HDDC3Q8N4P3 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
HDDC3Q8N4P3 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC19.77■□□□□ 0.75
HDDC3Q8N4P3 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.75
HDDC3Q8N4P3 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms