Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
CCDC65Q8IXS2 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
CCDC65Q8IXS2 MAX-217ENST00000557277 728 ntTSL 3 BASIC21.89■■□□□ 1.09
CCDC65Q8IXS2 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC21.89■■□□□ 1.09
CCDC65Q8IXS2 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC21.89■■□□□ 1.09
CCDC65Q8IXS2 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC21.89■■□□□ 1.09
CCDC65Q8IXS2 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
CCDC65Q8IXS2 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
CCDC65Q8IXS2 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC21.89■■□□□ 1.09
CCDC65Q8IXS2 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
CCDC65Q8IXS2 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC21.89■■□□□ 1.09
CCDC65Q8IXS2 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CCDC65Q8IXS2 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CCDC65Q8IXS2 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
CCDC65Q8IXS2 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CCDC65Q8IXS2 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CCDC65Q8IXS2 TFP1-202ENST00000475455 1573 ntBASIC21.88■■□□□ 1.09
CCDC65Q8IXS2 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC21.88■■□□□ 1.09
CCDC65Q8IXS2 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
CCDC65Q8IXS2 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC21.88■■□□□ 1.09
CCDC65Q8IXS2 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
CCDC65Q8IXS2 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC21.88■■□□□ 1.09
CCDC65Q8IXS2 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CCDC65Q8IXS2 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC21.88■■□□□ 1.09
CCDC65Q8IXS2 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
CCDC65Q8IXS2 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
CCDC65Q8IXS2 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC21.88■■□□□ 1.09
CCDC65Q8IXS2 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
CCDC65Q8IXS2 AC008687.6-201ENST00000596318 630 ntBASIC21.88■■□□□ 1.09
CCDC65Q8IXS2 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
CCDC65Q8IXS2 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CCDC65Q8IXS2 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CCDC65Q8IXS2 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
CCDC65Q8IXS2 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC21.88■■□□□ 1.09
CCDC65Q8IXS2 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC21.88■■□□□ 1.09
CCDC65Q8IXS2 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC21.88■■□□□ 1.09
CCDC65Q8IXS2 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CCDC65Q8IXS2 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
CCDC65Q8IXS2 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CCDC65Q8IXS2 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC21.87■■□□□ 1.09
CCDC65Q8IXS2 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC21.87■■□□□ 1.09
CCDC65Q8IXS2 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
CCDC65Q8IXS2 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CCDC65Q8IXS2 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC21.87■■□□□ 1.09
CCDC65Q8IXS2 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CCDC65Q8IXS2 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CCDC65Q8IXS2 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CCDC65Q8IXS2 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC21.87■■□□□ 1.09
CCDC65Q8IXS2 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CCDC65Q8IXS2 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CCDC65Q8IXS2 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC21.87■■□□□ 1.09
CCDC65Q8IXS2 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
CCDC65Q8IXS2 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CCDC65Q8IXS2 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CCDC65Q8IXS2 AL158211.5-201ENST00000623583 2518 ntBASIC21.87■■□□□ 1.09
CCDC65Q8IXS2 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CCDC65Q8IXS2 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC21.87■■□□□ 1.09
CCDC65Q8IXS2 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CCDC65Q8IXS2 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CCDC65Q8IXS2 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CCDC65Q8IXS2 TREX1-205ENST00000625293 1783 ntBASIC21.87■■□□□ 1.09
CCDC65Q8IXS2 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC21.87■■□□□ 1.09
CCDC65Q8IXS2 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CCDC65Q8IXS2 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CCDC65Q8IXS2 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CCDC65Q8IXS2 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
CCDC65Q8IXS2 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CCDC65Q8IXS2 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
CCDC65Q8IXS2 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
CCDC65Q8IXS2 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC21.86■■□□□ 1.09
CCDC65Q8IXS2 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CCDC65Q8IXS2 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC21.86■■□□□ 1.09
CCDC65Q8IXS2 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CCDC65Q8IXS2 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CCDC65Q8IXS2 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC21.86■■□□□ 1.09
CCDC65Q8IXS2 UNC93B4-201ENST00000505679 747 ntBASIC21.86■■□□□ 1.09
CCDC65Q8IXS2 UNC93B5-201ENST00000530315 699 ntBASIC21.86■■□□□ 1.09
CCDC65Q8IXS2 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC21.86■■□□□ 1.09
CCDC65Q8IXS2 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC21.86■■□□□ 1.09
CCDC65Q8IXS2 AL121906.2-201ENST00000621597 723 ntBASIC21.86■■□□□ 1.09
CCDC65Q8IXS2 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CCDC65Q8IXS2 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CCDC65Q8IXS2 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC21.86■■□□□ 1.09
CCDC65Q8IXS2 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CCDC65Q8IXS2 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CCDC65Q8IXS2 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
CCDC65Q8IXS2 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
CCDC65Q8IXS2 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC21.86■■□□□ 1.09
CCDC65Q8IXS2 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC21.86■■□□□ 1.09
CCDC65Q8IXS2 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC21.85■■□□□ 1.09
CCDC65Q8IXS2 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC21.85■■□□□ 1.09
CCDC65Q8IXS2 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
CCDC65Q8IXS2 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC21.85■■□□□ 1.09
CCDC65Q8IXS2 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CCDC65Q8IXS2 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
CCDC65Q8IXS2 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
CCDC65Q8IXS2 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC21.85■■□□□ 1.09
CCDC65Q8IXS2 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC21.85■■□□□ 1.09
CCDC65Q8IXS2 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
CCDC65Q8IXS2 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC21.85■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 57.3 ms