Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
USP48Q86UV5 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
USP48Q86UV5 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC24.17■■□□□ 1.46
USP48Q86UV5 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC24.17■■□□□ 1.46
USP48Q86UV5 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC24.17■■□□□ 1.46
USP48Q86UV5 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC24.17■■□□□ 1.46
USP48Q86UV5 AL137013.1-201ENST00000432946 1228 ntBASIC24.17■■□□□ 1.46
USP48Q86UV5 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC24.17■■□□□ 1.46
USP48Q86UV5 NUDT16P1-203ENST00000513809 620 ntBASIC24.17■■□□□ 1.46
USP48Q86UV5 CFL2-205ENST00000555765 632 ntTSL 2 BASIC24.17■■□□□ 1.46
USP48Q86UV5 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
USP48Q86UV5 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC24.17■■□□□ 1.46
USP48Q86UV5 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC24.17■■□□□ 1.46
USP48Q86UV5 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC24.17■■□□□ 1.46
USP48Q86UV5 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC24.17■■□□□ 1.46
USP48Q86UV5 CYP2D8P-201ENST00000433633 1490 ntBASIC24.17■■□□□ 1.46
USP48Q86UV5 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC24.17■■□□□ 1.46
USP48Q86UV5 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC24.17■■□□□ 1.46
USP48Q86UV5 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC24.17■■□□□ 1.46
USP48Q86UV5 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC24.17■■□□□ 1.46
USP48Q86UV5 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC24.17■■□□□ 1.46
USP48Q86UV5 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC24.17■■□□□ 1.46
USP48Q86UV5 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC24.17■■□□□ 1.46
USP48Q86UV5 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
USP48Q86UV5 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC24.16■■□□□ 1.46
USP48Q86UV5 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC24.16■■□□□ 1.46
USP48Q86UV5 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC24.16■■□□□ 1.46
USP48Q86UV5 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
USP48Q86UV5 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
USP48Q86UV5 TERF1P1-201ENST00000311003 1181 ntBASIC24.16■■□□□ 1.46
USP48Q86UV5 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC24.16■■□□□ 1.46
USP48Q86UV5 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
USP48Q86UV5 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC24.16■■□□□ 1.46
USP48Q86UV5 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
USP48Q86UV5 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC24.16■■□□□ 1.46
USP48Q86UV5 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC24.16■■□□□ 1.46
USP48Q86UV5 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
USP48Q86UV5 WDR88-203ENST00000592765 651 ntTSL 5 BASIC24.16■■□□□ 1.46
USP48Q86UV5 AL031963.3-201ENST00000606441 850 ntBASIC24.16■■□□□ 1.46
USP48Q86UV5 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC24.16■■□□□ 1.46
USP48Q86UV5 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
USP48Q86UV5 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
USP48Q86UV5 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC24.16■■□□□ 1.46
USP48Q86UV5 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
USP48Q86UV5 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC24.16■■□□□ 1.46
USP48Q86UV5 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
USP48Q86UV5 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
USP48Q86UV5 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
USP48Q86UV5 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC24.15■■□□□ 1.46
USP48Q86UV5 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
USP48Q86UV5 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC24.15■■□□□ 1.46
USP48Q86UV5 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC24.15■■□□□ 1.46
USP48Q86UV5 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC24.15■■□□□ 1.46
USP48Q86UV5 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC24.15■■□□□ 1.46
USP48Q86UV5 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC24.15■■□□□ 1.46
USP48Q86UV5 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC24.15■■□□□ 1.46
USP48Q86UV5 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
USP48Q86UV5 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC24.15■■□□□ 1.46
USP48Q86UV5 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC24.15■■□□□ 1.46
USP48Q86UV5 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC24.15■■□□□ 1.46
USP48Q86UV5 RBM42-202ENST00000586618 771 ntTSL 3 BASIC24.15■■□□□ 1.46
USP48Q86UV5 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC24.15■■□□□ 1.46
USP48Q86UV5 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC24.15■■□□□ 1.46
USP48Q86UV5 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
USP48Q86UV5 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC24.15■■□□□ 1.46
USP48Q86UV5 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC24.15■■□□□ 1.46
USP48Q86UV5 AC124283.5-201ENST00000624661 1809 ntBASIC24.14■■□□□ 1.46
USP48Q86UV5 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC24.14■■□□□ 1.46
USP48Q86UV5 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
USP48Q86UV5 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
USP48Q86UV5 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC24.14■■□□□ 1.46
USP48Q86UV5 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC24.14■■□□□ 1.46
USP48Q86UV5 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
USP48Q86UV5 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC24.14■■□□□ 1.45
USP48Q86UV5 AL390955.1-201ENST00000428694 934 ntBASIC24.14■■□□□ 1.45
USP48Q86UV5 AC104076.2-201ENST00000448912 469 ntBASIC24.14■■□□□ 1.45
USP48Q86UV5 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC24.14■■□□□ 1.45
USP48Q86UV5 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC24.14■■□□□ 1.45
USP48Q86UV5 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC24.14■■□□□ 1.45
USP48Q86UV5 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
USP48Q86UV5 AC073508.3-201ENST00000619697 1419 ntBASIC24.14■■□□□ 1.45
USP48Q86UV5 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC24.13■■□□□ 1.45
USP48Q86UV5 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
USP48Q86UV5 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
USP48Q86UV5 PCDHAC2-203ENST00000615316 3011 ntBASIC24.13■■□□□ 1.45
USP48Q86UV5 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
USP48Q86UV5 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
USP48Q86UV5 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC24.13■■□□□ 1.45
USP48Q86UV5 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC24.13■■□□□ 1.45
USP48Q86UV5 NAPSB-206ENST00000562112 1266 ntBASIC24.13■■□□□ 1.45
USP48Q86UV5 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC24.13■■□□□ 1.45
USP48Q86UV5 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC24.13■■□□□ 1.45
USP48Q86UV5 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC24.13■■□□□ 1.45
USP48Q86UV5 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC24.13■■□□□ 1.45
USP48Q86UV5 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC24.12■■□□□ 1.45
USP48Q86UV5 KRT18P22-201ENST00000402024 1347 ntBASIC24.12■■□□□ 1.45
USP48Q86UV5 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
USP48Q86UV5 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
USP48Q86UV5 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
USP48Q86UV5 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC24.12■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms