Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 H19-201ENST00000411754 1788 ntTSL 5 BASIC16.51■□□□□ 0.23
VPS13CQ709C8 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC16.51■□□□□ 0.23
VPS13CQ709C8 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VPS13CQ709C8 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
VPS13CQ709C8 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC16.51■□□□□ 0.23
VPS13CQ709C8 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
VPS13CQ709C8 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC16.51■□□□□ 0.23
VPS13CQ709C8 NDUFV2-AS1-203ENST00000608008 779 ntBASIC16.51■□□□□ 0.23
VPS13CQ709C8 AL023803.3-201ENST00000615559 522 ntBASIC16.51■□□□□ 0.23
VPS13CQ709C8 VPS72-207ENST00000640458 689 ntTSL 5 BASIC16.51■□□□□ 0.23
VPS13CQ709C8 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
VPS13CQ709C8 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC16.5■□□□□ 0.23
VPS13CQ709C8 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS13CQ709C8 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC16.5■□□□□ 0.23
VPS13CQ709C8 AC092338.2-201ENST00000568827 1415 ntBASIC16.5■□□□□ 0.23
VPS13CQ709C8 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS13CQ709C8 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS13CQ709C8 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
VPS13CQ709C8 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC16.5■□□□□ 0.23
VPS13CQ709C8 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
VPS13CQ709C8 HMGA1P5-201ENST00000412453 271 ntBASIC16.5■□□□□ 0.23
VPS13CQ709C8 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS13CQ709C8 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
VPS13CQ709C8 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC16.5■□□□□ 0.23
VPS13CQ709C8 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS13CQ709C8 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS13CQ709C8 AL391422.3-201ENST00000603791 2761 ntBASIC16.5■□□□□ 0.23
VPS13CQ709C8 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS13CQ709C8 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS13CQ709C8 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC16.5■□□□□ 0.23
VPS13CQ709C8 AL390719.1-204ENST00000412397 1219 ntBASIC16.5■□□□□ 0.23
VPS13CQ709C8 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC16.5■□□□□ 0.23
VPS13CQ709C8 COX11P1-201ENST00000489116 835 ntBASIC16.5■□□□□ 0.23
VPS13CQ709C8 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC16.5■□□□□ 0.23
VPS13CQ709C8 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS13CQ709C8 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS13CQ709C8 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS13CQ709C8 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
VPS13CQ709C8 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS13CQ709C8 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS13CQ709C8 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC16.49■□□□□ 0.23
VPS13CQ709C8 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VPS13CQ709C8 AL671277.2-201ENST00000458060 996 ntBASIC16.49■□□□□ 0.23
VPS13CQ709C8 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC16.49■□□□□ 0.23
VPS13CQ709C8 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC16.49■□□□□ 0.23
VPS13CQ709C8 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC16.49■□□□□ 0.23
VPS13CQ709C8 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS13CQ709C8 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC16.49■□□□□ 0.23
VPS13CQ709C8 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC16.49■□□□□ 0.23
VPS13CQ709C8 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VPS13CQ709C8 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS13CQ709C8 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS13CQ709C8 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS13CQ709C8 AC004980.1-204ENST00000429707 299 ntBASIC16.49■□□□□ 0.23
VPS13CQ709C8 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VPS13CQ709C8 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS13CQ709C8 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS13CQ709C8 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VPS13CQ709C8 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VPS13CQ709C8 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS13CQ709C8 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS13CQ709C8 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS13CQ709C8 AC004263.2-201ENST00000617183 678 ntBASIC16.49■□□□□ 0.23
VPS13CQ709C8 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC16.49■□□□□ 0.23
VPS13CQ709C8 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VPS13CQ709C8 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS13CQ709C8 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
VPS13CQ709C8 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC16.48■□□□□ 0.23
VPS13CQ709C8 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC16.48■□□□□ 0.23
VPS13CQ709C8 LINC01238-205ENST00000567549 1107 ntBASIC16.48■□□□□ 0.23
VPS13CQ709C8 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS13CQ709C8 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS13CQ709C8 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS13CQ709C8 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS13CQ709C8 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VPS13CQ709C8 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS13CQ709C8 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS13CQ709C8 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC16.48■□□□□ 0.23
VPS13CQ709C8 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VPS13CQ709C8 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS13CQ709C8 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS13CQ709C8 C2orf69P3-201ENST00000565542 1120 ntBASIC16.48■□□□□ 0.23
VPS13CQ709C8 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC16.48■□□□□ 0.23
VPS13CQ709C8 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC16.48■□□□□ 0.23
VPS13CQ709C8 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC16.48■□□□□ 0.23
VPS13CQ709C8 AL121956.5-201ENST00000625261 221 ntBASIC16.48■□□□□ 0.23
VPS13CQ709C8 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS13CQ709C8 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS13CQ709C8 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
VPS13CQ709C8 Z98882.1-201ENST00000622160 2253 ntBASIC16.47■□□□□ 0.23
VPS13CQ709C8 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
VPS13CQ709C8 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VPS13CQ709C8 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS13CQ709C8 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS13CQ709C8 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC16.47■□□□□ 0.23
VPS13CQ709C8 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS13CQ709C8 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
VPS13CQ709C8 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS13CQ709C8 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS13CQ709C8 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms