Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC40Q4G0X9 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC40Q4G0X9 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC40Q4G0X9 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC40Q4G0X9 MFF-205ENST00000354503 1085 ntTSL 2 BASIC21.67■■□□□ 1.06
CCDC40Q4G0X9 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC21.67■■□□□ 1.06
CCDC40Q4G0X9 SLC29A4P1-201ENST00000398760 971 ntBASIC21.67■■□□□ 1.06
CCDC40Q4G0X9 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC21.67■■□□□ 1.06
CCDC40Q4G0X9 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC21.67■■□□□ 1.06
CCDC40Q4G0X9 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC40Q4G0X9 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC40Q4G0X9 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC21.67■■□□□ 1.06
CCDC40Q4G0X9 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC40Q4G0X9 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC21.66■■□□□ 1.06
CCDC40Q4G0X9 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC40Q4G0X9 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC40Q4G0X9 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
CCDC40Q4G0X9 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC21.66■■□□□ 1.06
CCDC40Q4G0X9 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC21.66■■□□□ 1.06
CCDC40Q4G0X9 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC21.66■■□□□ 1.06
CCDC40Q4G0X9 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC40Q4G0X9 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC21.66■■□□□ 1.06
CCDC40Q4G0X9 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC40Q4G0X9 DUSP5P2-201ENST00000426873 1033 ntBASIC21.66■■□□□ 1.06
CCDC40Q4G0X9 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC21.66■■□□□ 1.06
CCDC40Q4G0X9 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC21.66■■□□□ 1.06
CCDC40Q4G0X9 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC21.66■■□□□ 1.06
CCDC40Q4G0X9 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC21.66■■□□□ 1.06
CCDC40Q4G0X9 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC21.66■■□□□ 1.06
CCDC40Q4G0X9 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC21.66■■□□□ 1.06
CCDC40Q4G0X9 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC21.66■■□□□ 1.06
CCDC40Q4G0X9 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC40Q4G0X9 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC40Q4G0X9 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC40Q4G0X9 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC40Q4G0X9 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC21.65■■□□□ 1.06
CCDC40Q4G0X9 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC40Q4G0X9 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC40Q4G0X9 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC21.65■■□□□ 1.06
CCDC40Q4G0X9 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC40Q4G0X9 POLI-202ENST00000406285 2030 ntTSL 2 BASIC21.65■■□□□ 1.06
CCDC40Q4G0X9 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC40Q4G0X9 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
CCDC40Q4G0X9 CRK-204ENST00000574295 1391 ntTSL 5 BASIC21.65■■□□□ 1.06
CCDC40Q4G0X9 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC40Q4G0X9 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC40Q4G0X9 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
CCDC40Q4G0X9 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
CCDC40Q4G0X9 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC40Q4G0X9 NME6-213ENST00000451657 871 ntTSL 2 BASIC21.65■■□□□ 1.06
CCDC40Q4G0X9 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
CCDC40Q4G0X9 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC21.65■■□□□ 1.06
CCDC40Q4G0X9 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC40Q4G0X9 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC40Q4G0X9 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC40Q4G0X9 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC40Q4G0X9 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC40Q4G0X9 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC40Q4G0X9 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC40Q4G0X9 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
CCDC40Q4G0X9 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC21.65■■□□□ 1.06
CCDC40Q4G0X9 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
CCDC40Q4G0X9 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC21.64■■□□□ 1.06
CCDC40Q4G0X9 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
CCDC40Q4G0X9 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC40Q4G0X9 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.05
CCDC40Q4G0X9 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC40Q4G0X9 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC40Q4G0X9 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC40Q4G0X9 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
CCDC40Q4G0X9 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC21.64■■□□□ 1.05
CCDC40Q4G0X9 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
CCDC40Q4G0X9 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC21.64■■□□□ 1.05
CCDC40Q4G0X9 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC21.64■■□□□ 1.05
CCDC40Q4G0X9 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC40Q4G0X9 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC21.64■■□□□ 1.05
CCDC40Q4G0X9 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC40Q4G0X9 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC40Q4G0X9 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC21.64■■□□□ 1.05
CCDC40Q4G0X9 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC40Q4G0X9 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC21.63■■□□□ 1.05
CCDC40Q4G0X9 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC40Q4G0X9 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC21.63■■□□□ 1.05
CCDC40Q4G0X9 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC21.63■■□□□ 1.05
CCDC40Q4G0X9 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC40Q4G0X9 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC40Q4G0X9 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC21.63■■□□□ 1.05
CCDC40Q4G0X9 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC40Q4G0X9 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC40Q4G0X9 AL390719.1-204ENST00000412397 1219 ntBASIC21.63■■□□□ 1.05
CCDC40Q4G0X9 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
CCDC40Q4G0X9 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC21.63■■□□□ 1.05
CCDC40Q4G0X9 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC40Q4G0X9 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
CCDC40Q4G0X9 AC092118.2-201ENST00000613495 667 ntBASIC21.63■■□□□ 1.05
CCDC40Q4G0X9 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC21.63■■□□□ 1.05
CCDC40Q4G0X9 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
CCDC40Q4G0X9 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
CCDC40Q4G0X9 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC40Q4G0X9 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC21.63■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms