Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC18.94■□□□□ 0.62
COL28A1Q2UY09 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL28A1Q2UY09 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL28A1Q2UY09 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC18.94■□□□□ 0.62
COL28A1Q2UY09 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL28A1Q2UY09 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
COL28A1Q2UY09 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL28A1Q2UY09 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL28A1Q2UY09 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC18.94■□□□□ 0.62
COL28A1Q2UY09 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL28A1Q2UY09 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL28A1Q2UY09 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC18.94■□□□□ 0.62
COL28A1Q2UY09 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC18.94■□□□□ 0.62
COL28A1Q2UY09 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL28A1Q2UY09 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
COL28A1Q2UY09 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC18.94■□□□□ 0.62
COL28A1Q2UY09 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL28A1Q2UY09 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
COL28A1Q2UY09 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL28A1Q2UY09 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC18.94■□□□□ 0.62
COL28A1Q2UY09 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC18.94■□□□□ 0.62
COL28A1Q2UY09 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC18.94■□□□□ 0.62
COL28A1Q2UY09 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC18.93■□□□□ 0.62
COL28A1Q2UY09 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL28A1Q2UY09 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL28A1Q2UY09 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC18.93■□□□□ 0.62
COL28A1Q2UY09 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC18.93■□□□□ 0.62
COL28A1Q2UY09 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
COL28A1Q2UY09 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL28A1Q2UY09 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL28A1Q2UY09 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL28A1Q2UY09 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL28A1Q2UY09 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC18.93■□□□□ 0.62
COL28A1Q2UY09 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC18.93■□□□□ 0.62
COL28A1Q2UY09 HES2-206ENST00000489730 730 ntTSL 2 BASIC18.93■□□□□ 0.62
COL28A1Q2UY09 AP002982.1-201ENST00000492365 877 ntBASIC18.93■□□□□ 0.62
COL28A1Q2UY09 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL28A1Q2UY09 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL28A1Q2UY09 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL28A1Q2UY09 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC18.93■□□□□ 0.62
COL28A1Q2UY09 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC18.93■□□□□ 0.62
COL28A1Q2UY09 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL28A1Q2UY09 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL28A1Q2UY09 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
COL28A1Q2UY09 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL28A1Q2UY09 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
COL28A1Q2UY09 NBPF21P-201ENST00000425093 1451 ntBASIC18.92■□□□□ 0.62
COL28A1Q2UY09 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL28A1Q2UY09 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC18.92■□□□□ 0.62
COL28A1Q2UY09 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC18.92■□□□□ 0.62
COL28A1Q2UY09 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL28A1Q2UY09 MOK-233ENST00000524214 1539 ntTSL 2 BASIC18.92■□□□□ 0.62
COL28A1Q2UY09 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL28A1Q2UY09 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC18.92■□□□□ 0.62
COL28A1Q2UY09 AC063952.2-201ENST00000498792 1227 ntBASIC18.92■□□□□ 0.62
COL28A1Q2UY09 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC18.92■□□□□ 0.62
COL28A1Q2UY09 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC18.92■□□□□ 0.62
COL28A1Q2UY09 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
COL28A1Q2UY09 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC18.91■□□□□ 0.62
COL28A1Q2UY09 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
COL28A1Q2UY09 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL28A1Q2UY09 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL28A1Q2UY09 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL28A1Q2UY09 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
COL28A1Q2UY09 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL28A1Q2UY09 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL28A1Q2UY09 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC18.91■□□□□ 0.62
COL28A1Q2UY09 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC18.91■□□□□ 0.62
COL28A1Q2UY09 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
COL28A1Q2UY09 AP000550.4-202ENST00000639755 178 ntBASIC18.91■□□□□ 0.62
COL28A1Q2UY09 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
COL28A1Q2UY09 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL28A1Q2UY09 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL28A1Q2UY09 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC18.91■□□□□ 0.62
COL28A1Q2UY09 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
COL28A1Q2UY09 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
COL28A1Q2UY09 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC18.9■□□□□ 0.62
COL28A1Q2UY09 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL28A1Q2UY09 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL28A1Q2UY09 EXOC3-AS1-202ENST00000623673 1663 ntBASIC18.9■□□□□ 0.62
COL28A1Q2UY09 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL28A1Q2UY09 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL28A1Q2UY09 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
COL28A1Q2UY09 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC18.9■□□□□ 0.62
COL28A1Q2UY09 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC18.9■□□□□ 0.62
COL28A1Q2UY09 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC18.9■□□□□ 0.62
COL28A1Q2UY09 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC18.9■□□□□ 0.62
COL28A1Q2UY09 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC18.9■□□□□ 0.62
COL28A1Q2UY09 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC18.9■□□□□ 0.62
COL28A1Q2UY09 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC18.9■□□□□ 0.62
COL28A1Q2UY09 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
COL28A1Q2UY09 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL28A1Q2UY09 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL28A1Q2UY09 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL28A1Q2UY09 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL28A1Q2UY09 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC18.9■□□□□ 0.62
COL28A1Q2UY09 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
COL28A1Q2UY09 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.62
COL28A1Q2UY09 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
COL28A1Q2UY09 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms