Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC20.51■□□□□ 0.87
CDH6P55285 AL355802.2-201ENST00000402069 882 ntBASIC20.51■□□□□ 0.87
CDH6P55285 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC20.51■□□□□ 0.87
CDH6P55285 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
CDH6P55285 AC083880.1-201ENST00000608266 535 ntBASIC20.51■□□□□ 0.87
CDH6P55285 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC20.51■□□□□ 0.87
CDH6P55285 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC20.51■□□□□ 0.87
CDH6P55285 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CDH6P55285 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC20.51■□□□□ 0.87
CDH6P55285 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
CDH6P55285 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CDH6P55285 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC20.51■□□□□ 0.87
CDH6P55285 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
CDH6P55285 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC20.51■□□□□ 0.87
CDH6P55285 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC20.51■□□□□ 0.87
CDH6P55285 AC092368.3-202ENST00000574180 1591 ntBASIC20.51■□□□□ 0.87
CDH6P55285 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CDH6P55285 AC018553.1-201ENST00000616682 1458 ntBASIC20.5■□□□□ 0.87
CDH6P55285 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CDH6P55285 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CDH6P55285 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CDH6P55285 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CDH6P55285 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CDH6P55285 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CDH6P55285 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CDH6P55285 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC20.5■□□□□ 0.87
CDH6P55285 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CDH6P55285 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
CDH6P55285 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
CDH6P55285 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CDH6P55285 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC20.5■□□□□ 0.87
CDH6P55285 RGMA-211ENST00000557420 989 ntTSL 3 BASIC20.5■□□□□ 0.87
CDH6P55285 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CDH6P55285 HLA-B-256ENST00000639848 1089 ntBASIC20.5■□□□□ 0.87
CDH6P55285 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
CDH6P55285 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC20.5■□□□□ 0.87
CDH6P55285 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
CDH6P55285 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CDH6P55285 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
CDH6P55285 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC20.5■□□□□ 0.87
CDH6P55285 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC20.5■□□□□ 0.87
CDH6P55285 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CDH6P55285 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
CDH6P55285 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC20.49■□□□□ 0.87
CDH6P55285 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CDH6P55285 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CDH6P55285 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CDH6P55285 CALM3-202ENST00000391918 702 ntTSL 2 BASIC20.49■□□□□ 0.87
CDH6P55285 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CDH6P55285 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC20.49■□□□□ 0.87
CDH6P55285 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CDH6P55285 AC116351.2-201ENST00000606540 1585 ntBASIC20.49■□□□□ 0.87
CDH6P55285 POLI-202ENST00000406285 2030 ntTSL 2 BASIC20.49■□□□□ 0.87
CDH6P55285 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC20.49■□□□□ 0.87
CDH6P55285 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
CDH6P55285 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CDH6P55285 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CDH6P55285 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
CDH6P55285 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC20.48■□□□□ 0.87
CDH6P55285 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
CDH6P55285 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC20.48■□□□□ 0.87
CDH6P55285 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC20.48■□□□□ 0.87
CDH6P55285 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CDH6P55285 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
CDH6P55285 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CDH6P55285 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CDH6P55285 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
CDH6P55285 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CDH6P55285 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC20.48■□□□□ 0.87
CDH6P55285 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC20.48■□□□□ 0.87
CDH6P55285 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CDH6P55285 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CDH6P55285 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CDH6P55285 AC116562.4-201ENST00000641316 2276 ntBASIC20.48■□□□□ 0.87
CDH6P55285 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CDH6P55285 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC20.48■□□□□ 0.87
CDH6P55285 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
CDH6P55285 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC20.48■□□□□ 0.87
CDH6P55285 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
CDH6P55285 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC20.48■□□□□ 0.87
CDH6P55285 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CDH6P55285 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CDH6P55285 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CDH6P55285 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC20.47■□□□□ 0.87
CDH6P55285 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CDH6P55285 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CDH6P55285 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC20.47■□□□□ 0.87
CDH6P55285 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CDH6P55285 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC20.47■□□□□ 0.87
CDH6P55285 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
CDH6P55285 PNMA6B-201ENST00000538162 1200 ntBASIC20.47■□□□□ 0.87
CDH6P55285 REXO2-208ENST00000539754 791 ntTSL 2 BASIC20.47■□□□□ 0.87
CDH6P55285 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC20.47■□□□□ 0.87
CDH6P55285 AC060766.5-201ENST00000590539 871 ntBASIC20.47■□□□□ 0.87
CDH6P55285 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC20.47■□□□□ 0.87
CDH6P55285 AC124283.5-201ENST00000624661 1809 ntBASIC20.47■□□□□ 0.87
CDH6P55285 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC20.47■□□□□ 0.87
CDH6P55285 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
CDH6P55285 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CDH6P55285 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms