Protein–RNA interactions for Protein: P46736

BRCC3, Lys-63-specific deubiquitinase BRCC36, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCC3P46736 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
BRCC3P46736 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC21.03■□□□□ 0.96
BRCC3P46736 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
BRCC3P46736 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
BRCC3P46736 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC21.03■□□□□ 0.96
BRCC3P46736 MOK-225ENST00000522867 1883 ntTSL 5 BASIC21.03■□□□□ 0.96
BRCC3P46736 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
BRCC3P46736 AC079598.2-202ENST00000546624 1451 ntBASIC21.02■□□□□ 0.96
BRCC3P46736 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
BRCC3P46736 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
BRCC3P46736 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
BRCC3P46736 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC21.02■□□□□ 0.96
BRCC3P46736 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC21.02■□□□□ 0.96
BRCC3P46736 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
BRCC3P46736 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC21.02■□□□□ 0.96
BRCC3P46736 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC21.02■□□□□ 0.96
BRCC3P46736 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC21.02■□□□□ 0.96
BRCC3P46736 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC21.02■□□□□ 0.96
BRCC3P46736 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC21.02■□□□□ 0.96
BRCC3P46736 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
BRCC3P46736 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
BRCC3P46736 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
BRCC3P46736 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
BRCC3P46736 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
BRCC3P46736 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
BRCC3P46736 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
BRCC3P46736 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC21.01■□□□□ 0.95
BRCC3P46736 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
BRCC3P46736 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
BRCC3P46736 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
BRCC3P46736 CD37-204ENST00000535669 1674 ntTSL 2 BASIC21.01■□□□□ 0.95
BRCC3P46736 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
BRCC3P46736 CLDN5-201ENST00000403084 2357 ntBASIC21.01■□□□□ 0.95
BRCC3P46736 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
BRCC3P46736 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
BRCC3P46736 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC21■□□□□ 0.95
BRCC3P46736 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC21■□□□□ 0.95
BRCC3P46736 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
BRCC3P46736 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
BRCC3P46736 MMP23A-201ENST00000234610 1017 ntBASIC21■□□□□ 0.95
BRCC3P46736 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC21■□□□□ 0.95
BRCC3P46736 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC21■□□□□ 0.95
BRCC3P46736 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC21■□□□□ 0.95
BRCC3P46736 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC21■□□□□ 0.95
BRCC3P46736 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC21■□□□□ 0.95
BRCC3P46736 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC21■□□□□ 0.95
BRCC3P46736 AP000525.1-201ENST00000608286 694 ntBASIC21■□□□□ 0.95
BRCC3P46736 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC21■□□□□ 0.95
BRCC3P46736 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
BRCC3P46736 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC21■□□□□ 0.95
BRCC3P46736 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
BRCC3P46736 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
BRCC3P46736 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
BRCC3P46736 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
BRCC3P46736 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
BRCC3P46736 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
BRCC3P46736 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
BRCC3P46736 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC20.99■□□□□ 0.95
BRCC3P46736 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
BRCC3P46736 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
BRCC3P46736 KRT8P9-201ENST00000558927 1449 ntBASIC20.99■□□□□ 0.95
BRCC3P46736 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
BRCC3P46736 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC20.99■□□□□ 0.95
BRCC3P46736 AC116562.2-201ENST00000507042 360 ntBASIC20.99■□□□□ 0.95
BRCC3P46736 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC20.99■□□□□ 0.95
BRCC3P46736 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC20.99■□□□□ 0.95
BRCC3P46736 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC20.99■□□□□ 0.95
BRCC3P46736 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC20.99■□□□□ 0.95
BRCC3P46736 ABBA01031674.1-201ENST00000635145 728 ntBASIC20.99■□□□□ 0.95
BRCC3P46736 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.99■□□□□ 0.95
BRCC3P46736 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
BRCC3P46736 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.99■□□□□ 0.95
BRCC3P46736 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
BRCC3P46736 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
BRCC3P46736 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
BRCC3P46736 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
BRCC3P46736 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
BRCC3P46736 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
BRCC3P46736 TMEM179-206ENST00000616017 1645 ntBASIC20.98■□□□□ 0.95
BRCC3P46736 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC20.98■□□□□ 0.95
BRCC3P46736 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
BRCC3P46736 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC20.98■□□□□ 0.95
BRCC3P46736 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC20.98■□□□□ 0.95
BRCC3P46736 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC20.98■□□□□ 0.95
BRCC3P46736 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
BRCC3P46736 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
BRCC3P46736 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
BRCC3P46736 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
BRCC3P46736 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
BRCC3P46736 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
BRCC3P46736 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC20.97■□□□□ 0.95
BRCC3P46736 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
BRCC3P46736 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
BRCC3P46736 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
BRCC3P46736 UNC93B2-201ENST00000285383 730 ntBASIC20.97■□□□□ 0.95
BRCC3P46736 AL390955.1-201ENST00000428694 934 ntBASIC20.97■□□□□ 0.95
BRCC3P46736 AC012306.2-201ENST00000609350 630 ntBASIC20.97■□□□□ 0.95
BRCC3P46736 AL445675.2-201ENST00000620291 557 ntBASIC20.97■□□□□ 0.95
BRCC3P46736 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC20.97■□□□□ 0.95
BRCC3P46736 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms